Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0185
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0574 - 4697425-4698312                                           28   8.1  
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    28   8.1  

>12_01_0574 - 4697425-4698312
          Length = 295

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -2

Query: 219 TATLRHARGDYYFYIEILRNV-----RGDDAECYRAVCGQANHSQEL 94
           TA LR    D    +++LR       RGD A CY AV G+A   ++L
Sbjct: 112 TAGLRGRLQDLTAGVQVLRRQVSAERRGDAARCYLAVAGEAPTEEQL 158


>03_05_0890 - 28547462-28547545,28548451-28548528,28548641-28548814,
            28548902-28548958,28549065-28549116,28549907-28549995,
            28550259-28550344,28550427-28550637,28551790-28551882,
            28551958-28552098,28552175-28552267,28553879-28554113,
            28554263-28554435,28555234-28556571,28556668-28556853,
            28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 373  CIS*TNALIALLNSTIYLAYLAILHVLHEDIKP 275
            C+    A I L    + L YL  +H++H D+KP
Sbjct: 1004 CLDEDVARIYLAEVVLALEYLHSMHIVHRDLKP 1036


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,218,101
Number of Sequences: 37544
Number of extensions: 349149
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)