Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0184
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1506 + 30641428-30642168 33 0.20
06_02_0122 - 12095385-12095713,12096018-12096120 31 0.60
06_02_0125 + 12122812-12122911,12123647-12123993 31 1.0
02_02_0639 - 12503525-12504289 31 1.0
10_08_0213 - 15912048-15912716 30 1.8
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 29 2.4
12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538... 29 4.2
03_05_0185 + 21713500-21714291 29 4.2
07_03_1751 - 29215074-29216270 28 5.6
03_06_0590 + 34932012-34932641 28 5.6
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584... 28 7.4
07_03_0560 + 19479597-19480667 28 7.4
06_02_0123 + 12104187-12104252,12105455-12105775 28 7.4
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593... 28 7.4
03_05_0663 + 26546810-26547304 28 7.4
06_02_0127 + 12140843-12140966,12141170-12141567 27 9.7
06_02_0126 + 12130409-12130532,12131015-12131373 27 9.7
>06_03_1506 + 30641428-30642168
Length = 246
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 GYGYGID-GLDVGYIXHGQGLGGAYNYVDGGYSSG 253
GYG G D G G HG G GG Y +GGY SG
Sbjct: 127 GYGSGYDYGGQGGGGGHGGGGGGGSGYGNGGYGSG 161
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGSAS 262
GYGYG G G G GG+YN GGY G S
Sbjct: 200 GYGYGGGPGGGGGGAGGGGGGGSYNGGTGGYGEGHGS 236
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSG 253
GYG G + GY HG G G Y + +GG G
Sbjct: 38 GYGSGGGEGNGGY-GHGYGYGSGYGFGNGGVGGG 70
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 146 NLGYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSG 253
N GYG+G G GY G+GG GGY SG
Sbjct: 47 NGGYGHGY-GYGSGYGFGNGGVGGGGYGGGGGYGSG 81
>06_02_0122 - 12095385-12095713,12096018-12096120
Length = 143
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIX-HGQGLGGAYNYVDGGYSSG 253
G GYG G GY +G+G GG Y GGY G
Sbjct: 84 GGGYGHPGYGGGYGGGYGRGYGGGYGGSGGGYGGG 118
>06_02_0125 + 12122812-12122911,12123647-12123993
Length = 148
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNY--VDGGYSSG 253
GYG G G G+ +G G GG Y + GGY G
Sbjct: 62 GYGGGYGGGGYGHPGYGGGYGGGYGHPGYGGGYGGG 97
>02_02_0639 - 12503525-12504289
Length = 254
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 GYGYGIDGLDVGY-IXHGQGLGGAYNYVDGGYSSG 253
GY G D GY G G GG Y Y GGY SG
Sbjct: 6 GYYGGRDSPPQGYGYGGGYGYGGGYGYDAGGYYSG 40
>10_08_0213 - 15912048-15912716
Length = 222
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGS 256
GYG G G G HG G GG GGY SGS
Sbjct: 137 GYGSGAGGASGGGGGHGGGGGGGQG---GGYGSGS 168
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 149 LGYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGS 256
LGYG G +G G G G GG Y GY SGS
Sbjct: 28 LGYGIGGEGGGGG---GGGGSGGGGGYGGSGYGSGS 60
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGS 256
GYG G GY G G GG GY SGS
Sbjct: 175 GYGQGGGAYGGGYASGGGGGGGGGQGGGSGYGSGS 209
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGSASTS 268
G G G G GY G G GG Y GGY G STS
Sbjct: 662 GGGGGYGGGGGGYGGGGYGGGGGYG---GGYGGGQGSTS 697
>12_01_0639 +
5383967-5385951,5386973-5387066,5387410-5387841,
5387935-5388219,5388324-5388641,5388756-5388983,
5389264-5389364,5389447-5389552,5389782-5390132,
5390262-5390401,5390687-5390861,5390937-5390954
Length = 1410
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 574 LVEGTFPLXPXKVXSCPKPLT 636
L PL P K SCPKPLT
Sbjct: 6 LAAANHPLLPSKPLSCPKPLT 26
>03_05_0185 + 21713500-21714291
Length = 263
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGSAS 262
GYGYG G GY G G GG Y Y++ A+
Sbjct: 15 GYGYGYGG--AGYDMAGYGGGGGGYYTSDPYNAAPAA 49
>07_03_1751 - 29215074-29216270
Length = 398
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 131 KRGLLNLGYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSG 253
K G + +G G G G G + HG G+GG + GG G
Sbjct: 57 KGGGVGVGGGGGFGGGAGGGLGHGGGIGGGFGGGKGGGLGG 97
>03_06_0590 + 34932012-34932641
Length = 209
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 146 NLGYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGSASTSV 271
N G L+ Y+ HG+ GA V GY + T V
Sbjct: 82 NWAMGVTYRSLEASYLFHGKRFDGAAAVVSSGYEQAARKTEV 123
>07_03_1175 -
24555965-24556117,24557809-24558264,24558270-24558436,
24558468-24558756,24559620-24559726,24559841-24559909,
24560001-24560109
Length = 449
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGSASTS 268
GYG G G GY +G G A Y GGY +G S+S
Sbjct: 136 GYGTGEYGRGGGYAGNGGYGGRASEY--GGYGAGGYSSS 172
>07_03_0560 + 19479597-19480667
Length = 356
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSGSASTSVDI 277
G G G+ G G + HG GLGG + GG G V +
Sbjct: 295 GAGGGLGGGAGGGLGHGGGLGGGLGH-GGGLGGGGFGVGVGV 335
>06_02_0123 + 12104187-12104252,12105455-12105775
Length = 128
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIX-HGQGLGGAYNYVDGGYSSG 253
G GYG GY +G G GG Y GGY G
Sbjct: 69 GGGYGYPRYGGGYGGGYGCGYGGGYGGYGGGYGGG 103
>04_04_0432 +
25157722-25157950,25158045-25158659,25159298-25159380,
25159906-25159979,25160101-25160151,25160295-25160371,
25160856-25161595
Length = 622
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 185 GYIXHGQGLGGAYNYVDGGYSSGSASTSV 271
GY+ G +GGA Y +GG G+ S+
Sbjct: 136 GYLYSGSAVGGAGGYSNGGCGGGTIELSM 164
>03_05_0663 + 26546810-26547304
Length = 164
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIXHGQGLGGAYNYVDGGYSSG 253
G G G+ G +V + G G GG Y GGYS G
Sbjct: 75 GMGGGMGGFNVPGM--GGGWGGGYGTPSGGYSRG 106
>06_02_0127 + 12140843-12140966,12141170-12141567
Length = 173
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIX-HGQGLGGAYNYVDGGYSSG 253
G GYG G GY +G G GG Y GGY G
Sbjct: 70 GGGYG-GGYGSGYGGGNGGGYGGGYGGYGGGYGGG 103
>06_02_0126 + 12130409-12130532,12131015-12131373
Length = 160
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 GYGYGIDGLDVGYIX-HGQGLGGAYNYVDGGYSSG 253
G GYG G GY +G G GG Y GGY G
Sbjct: 70 GGGYG-GGYGSGYGGGNGGGYGGGYGGYGGGYGGG 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,069,590
Number of Sequences: 37544
Number of extensions: 218470
Number of successful extensions: 604
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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