Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0184
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21135| Best HMM Match : Peroxin-13_N (HMM E-Value=0)                34   0.11 
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)                  27   9.9  

>SB_21135| Best HMM Match : Peroxin-13_N (HMM E-Value=0)
          Length = 383

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 110 PLEKKLDKRGLLNLGYGYGIDGLDVGYIXHGQGLGG--AYNYVDGGYSSGSASTSV 271
           P+  +  + G+ ++G GYG+     GY  +G G GG  +Y  ++ GY     ST V
Sbjct: 60  PIPSRPQRAGMSSMGSGYGMS--SYGYGGYGGGYGGHPSYGMMNRGYGQEGTSTFV 113


>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1525

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 167 YRIHTRGSGDHVCPISSLG-VQLCFLSSSSHWQPLL 63
           +R  T GS  H  P   L  V L   S  +HWQPLL
Sbjct: 828 HRQQTSGSKTHRTPFYMLDRVGLPIFSYDNHWQPLL 863


>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 146 NLGYGYGIDG-LDVGYIXHGQGLGGAYNYVDGGYSSGS 256
           N GYGYG DG    GY   G   G  Y   DG Y  G+
Sbjct: 152 NYGYGYGCDGNYGCGYGCDG-NYGCGYG-CDGNYGCGN 187


>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
          Length = 720

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 176 LDVGYIXHGQGLGGAYNYVDGGYSSGSASTSVD 274
           +D GY  H     G +    G  SSGS S  +D
Sbjct: 172 MDYGYAAHAMNTRGTFEATFGSSSSGSGSHDLD 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,235,394
Number of Sequences: 59808
Number of extensions: 222909
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)