Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0180
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.24 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   6.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = -1

Query: 633  PVRTPHKGYXMAERPSGTRVVXRR*YPGRSTAVWDRSPGRXGSYCGDPPTPRGVPLPAAP 454
            PV  P         PSG   V +         V   +P         PP P   P  A P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP--APSGAPP 1160

Query: 453  IPRPSVLAPLVAS*KSAV 400
            +P+PSV AP V +  S +
Sbjct: 1161 VPKPSVAAPPVPAPSSGI 1178



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 498  GDPPTPRGVPLPAAPIPRPSVLAPLVAS*KSAV 400
            G PP P    +P  P+P+PSV AP V     AV
Sbjct: 1081 GAPPVPAPSGIP--PVPKPSVAAPPVPKPSVAV 1111



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 498  GDPPTPRGVPLPAAPIPRPSVLAPLV 421
            G PP P+   + A P+P+PSV  P V
Sbjct: 1090 GIPPVPKP-SVAAPPVPKPSVAVPPV 1114



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 498  GDPPTPRGVPLPAAPIPRPSVLAPLV 421
            G PP P   P  A P+P+PSV  P V
Sbjct: 1187 GVPPVPP--PSEAPPVPKPSVGVPPV 1210


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 141 EDNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNP-STANKMLIKP-RLSNSNQHNR 314
           E N +S P   + ++DP+  Q+  ST+  +    +Y P ST +  L+ P  +S++   + 
Sbjct: 95  ETNSYSSPV--SSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSS 152

Query: 315 QSCRLCHHQPAASTQDP 365
            S  +     + S+ DP
Sbjct: 153 TSVEVSISSSSLSSSDP 169


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 114 ENLLKMSKFEDNPFSDPTIDN--PFADPSVQQVARSTNNATRGLEDYNPSTANKMLIKPR 287
           E+L     F+ N    P  DN  PF  P  Q   +S++ A R     + S  N+   KPR
Sbjct: 195 ESLNPTLSFQHNDV--PQTDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNGKPR 252

Query: 288 LS 293
           +S
Sbjct: 253 IS 254


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 172 SMVGSLNGLSSNLDIFNKFSAL--LFSF 95
           S + S N + +N D+FN+F AL  L SF
Sbjct: 586 SKIHSQNFMETNADMFNRFEALQCLLSF 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,777
Number of Sequences: 5004
Number of extensions: 47983
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)