Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0180
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_13427| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 29 4.1
SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 29 5.4
SB_54895| Best HMM Match : S1 (HMM E-Value=4.3) 29 5.4
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 7.2
SB_1097| Best HMM Match : Rho_N (HMM E-Value=0.0007) 28 7.2
SB_57503| Best HMM Match : Brevenin (HMM E-Value=2) 28 7.2
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 7.2
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27) 28 9.5
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 28 9.5
>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 38.3 bits (85), Expect = 0.007
Identities = 50/177 (28%), Positives = 65/177 (36%), Gaps = 27/177 (15%)
Frame = +3
Query: 144 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDY-----------------------NP 254
D + DP +NPFADPSV + T+ A+RGL D+ NP
Sbjct: 3 DGGYGDP--ENPFADPSVTDM---TSGASRGLGDFNPFAEQDTSSGLTTKVCLFHGKNNP 57
Query: 255 STANK----MLIKPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRLHQISQLLIFKXX 422
TA +L LSN N S P T P SR + S L F+
Sbjct: 58 FTAKSFTLVVLFLRALSNDNSSPSSSATTT--APGKDTAKPTSRASDPSRSSALCGFERK 115
Query: 423 XXXXXXXXXXXXXXXXXXXXGSAGRHNNCRXSRGFCPIQPCFYQDINVXIPLEFQRV 593
S R NN + +PCFY DI V IP+E+Q++
Sbjct: 116 AAELQRKEQELQRMQY-----SGYRENNFPPLPKWFKCKPCFYHDIQVDIPIEYQKL 167
>SB_13427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 34.7 bits (76), Expect = 0.083
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 495 RHNNCRXSRGFCPIQPCFYQDINVXIPLEFQRV 593
R NN + +PCFY DI V IP+E+Q++
Sbjct: 3 RENNFPPLPEWFKFKPCFYHDIQVDIPIEYQKL 35
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 492 PPTPRGVPLPAAPIPRPSVLAPLVAS*KSAVVKFGGGAEA 373
PP P GVP P P P P + P + + S G ++A
Sbjct: 306 PPLPAGVPAPPPPPPPPMLGGPKIKTSDSQASVGSGSSQA 345
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 332 SPPASSQYTRPAQQASAPPPNFTTADFQEAT 424
SPP ++ T P+QQ S PP TT+ Q+ T
Sbjct: 697 SPPQTT--TSPSQQTSTSPPQTTTSPSQQTT 725
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 332 SPPASSQYTRPAQQASA-PPPNFTTADFQEATRG 430
+PP YT P A A PPP + A Q+ G
Sbjct: 710 TPPPQQAYTSPPSSAPAPPPPQYNQASMQQLQYG 743
>SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = +3
Query: 144 DNPFSDPTIDNPFADPSVQQVARS--TNNATRGLEDYNPSTANKMLIKPRLSNSNQH-NR 314
+NP S+P +NP ++P + + NN + + NPS+ P+ +N + NR
Sbjct: 200 NNPSSNPKSNNPSSNPKPNNPSSNPKPNNPSSNPKSNNPSS------NPKPNNPGTYLNR 253
Query: 315 QSC---RLCHHQPAASTQD 362
+SC + HH P + ++
Sbjct: 254 KSCSESQQIHHLPQQAKRE 272
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 492 PPTPRGVPLPAAPIPRPSVLAP 427
PP+P VP P AP RP P
Sbjct: 204 PPSPEPVPTPKAPASRPGTKRP 225
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 492 PPTPRGVPLPAAPIPRPSVLAP 427
PP+P VP P AP RP P
Sbjct: 28 PPSPEPVPTPKAPASRPGTKRP 49
>SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)
Length = 479
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -1
Query: 522 PGRXGSYCGDPPTPRGVPL----PAAPIPRPS 439
P R G G P+P GV L PA+P PRP+
Sbjct: 317 PSRVGPQVGLLPSPAGVTLISTPPASPTPRPA 348
>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 2629
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 492 PPTPRGVPLP--AAPIPRPSVLAPLVAS*KSA 403
PP PR VPLP +PRP + P S K+A
Sbjct: 556 PPPPRRVPLPKLVKGLPRPPRITPSNTSEKAA 587
>SB_1097| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 211
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -1
Query: 492 PPTPRGVPLP--AAPIPRPSVLAP 427
PP PR VPLP +PRPS + P
Sbjct: 45 PPPPRRVPLPKLVKGLPRPSRITP 68
>SB_57503| Best HMM Match : Brevenin (HMM E-Value=2)
Length = 247
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/110 (22%), Positives = 49/110 (44%)
Frame = +3
Query: 63 LKLSFVLVIH*KLNNSAENLLKMSKFEDNPFSDPTIDNPFADPSVQQVARSTNNATRGLE 242
LK++ VL++ +N SA++ +D+ + +D+ D TN+ R
Sbjct: 6 LKMTVVLLM--MINISADDC-DDDNCDDDDSDNNDVDDDDDDDDGDSDGDDTNSCARSAF 62
Query: 243 DYNPSTANKMLIKPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRLHQ 392
Y P T ++M ++P+ +H R+ R H + Q P +L + +
Sbjct: 63 RYIPGTTDRMNMRPK---HKKHKRRK-RGHHKRHELEGQPPKKKLSTIFE 108
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 492 PPTPRGVPLPAAPIPRPSVLAPLVAS*KSAVVKFGGGAEA 373
PP P + AAP P SVL + KS VV GGG E+
Sbjct: 204 PPPPPPILELAAPPPPGSVLGAALTGIKSGVV--GGGGES 241
>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
Length = 799
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 105 NSAENLLKMSKFEDNPFSDPTIDNPFADPSVQQVARST 218
N EN +M N + P PF P+VQ VAR+T
Sbjct: 716 NMMENNYQMGVEMQNSWDMPDSVYPFTPPNVQPVARAT 753
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 331 VTTSQQPVHKTRTAGFSASTKFHNC*FSRGDKRS*NGRPRNWRGGKRN 474
VT S+ V+ TRT FSAS + HN + + GR N G N
Sbjct: 883 VTMSRPFVYITRTETFSASHRLHNPTLTNQKNQELFGRCNNKNGHGHN 930
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,810,615
Number of Sequences: 59808
Number of extensions: 408145
Number of successful extensions: 1519
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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