Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0180
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 56 3e-08
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 56 3e-08
Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical p... 30 2.1
Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 6.3
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 28 8.4
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 28 8.4
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 28 8.4
AF000265-9|AAB52943.2| 449|Caenorhabditis elegans Hypothetical ... 28 8.4
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 56.0 bits (129), Expect = 3e-08
Identities = 42/151 (27%), Positives = 63/151 (41%)
Frame = +3
Query: 144 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPSTANKMLIKPRLSNSNQHNRQSC 323
DNPF+DP P + ++ T+ T ED+NP AN+ SN+ QS
Sbjct: 3 DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPF-ANRA----GGSNAQPTTHQST 57
Query: 324 RLCHHQPAASTQDPHSRLQRLHQISQLLIFKXXXXXXXXXXXXXXXXXXXXXXGSAGRHN 503
++ A + + Q L + +Q L + +A R +
Sbjct: 58 GSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRRQRSAAGGNNLNTNAQNNAPRPH 117
Query: 504 NCRXSRGFCPIQPCFYQDINVXIPLEFQRVV 596
N PI+PCFYQDI V IP++FQ+ V
Sbjct: 118 NWPPLPTIIPIEPCFYQDIEVEIPVQFQKTV 148
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 56.0 bits (129), Expect = 3e-08
Identities = 42/151 (27%), Positives = 63/151 (41%)
Frame = +3
Query: 144 DNPFSDPTIDNPFADPSVQQVARSTNNATRGLEDYNPSTANKMLIKPRLSNSNQHNRQSC 323
DNPF+DP P + ++ T+ T ED+NP AN+ SN+ QS
Sbjct: 3 DNPFADPFSAPPPPPAAAAAASKPTSGGTIETEDFNPF-ANRA----GGSNAQPTTHQST 57
Query: 324 RLCHHQPAASTQDPHSRLQRLHQISQLLIFKXXXXXXXXXXXXXXXXXXXXXXGSAGRHN 503
++ A + + Q L + +Q L + +A R +
Sbjct: 58 GSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRRQRSAAGGNNLNTNAQNNAPRPH 117
Query: 504 NCRXSRGFCPIQPCFYQDINVXIPLEFQRVV 596
N PI+PCFYQDI V IP++FQ+ V
Sbjct: 118 NWPPLPTIIPIEPCFYQDIEVEIPVQFQKTV 148
>Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 543 TAVWDRSPGRXGSYCGDPPTPRGVPLPAAPIP 448
TAV+ R G GS CG PP+ P PA +P
Sbjct: 3 TAVFGRDSGEPGSPCGAPPSLTFTP-PATLVP 33
>Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 543 TAVWDRSPGRXGSYCGDPPTPRGVPLPAAPIP 448
TAV+ R G GS CG PP+ P PA +P
Sbjct: 3 TAVFGRDSGEPGSPCGAPPSLTFTP-PATLVP 33
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 522 PGRXGSYCGDPPTPRGVPLPAAPIPRPSVLAP 427
P R GS+C PP G P P +P P P
Sbjct: 1575 PPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPP 1606
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 558 YPGRSTAVWDRSPGRXGSYCGDPPTPRGVPLPAAPIPRP 442
YP ++ A +PG G G P TP+ P P+P
Sbjct: 283 YPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNPQP 321
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 558 YPGRSTAVWDRSPGRXGSYCGDPPTPRGVPLPAAPIPRP 442
YP ++ A +PG G G P TP+ P P+P
Sbjct: 281 YPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNPQP 319
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 546 STAVWDRSPGRXGSYCGDPPTPRGVPLPAAPIPRP 442
ST W + P + G+ CG P+ +PL AP P
Sbjct: 589 STKTWTQ-PRKSGAVCGQDPSYCDLPLSVAPYEWP 622
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 546 STAVWDRSPGRXGSYCGDPPTPRGVPLPAAPIPRP 442
ST W + P + G+ CG P+ +PL AP P
Sbjct: 334 STKTWTQ-PRKSGAVCGQDPSYCDLPLSVAPYEWP 367
>AF000265-9|AAB52943.2| 449|Caenorhabditis elegans Hypothetical
protein C18E3.2 protein.
Length = 449
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = -1
Query: 516 RXGSYCGDPPT---PRGVPLPAAPIPR 445
R G + G PP PR V PAAP+P+
Sbjct: 27 RPGGFAGQPPQMHGPRMVAPPAAPLPK 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,961
Number of Sequences: 27780
Number of extensions: 300975
Number of successful extensions: 1332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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