Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0180
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = +3

Query: 96  KLNNSAENLLKMSK---FEDNPFSDPTI----DNPFADPSVQQVARSTNNATRGLEDYNP 254
           ++N +   + K SK     DNP S   +    +NPF+D   ++V+++  N+ + + D + 
Sbjct: 294 RMNLTLAKMEKTSKPLPMVDNPESTGNLVYIYNNPFSDVEERRVSKTAMNSNQIVSDNSL 353

Query: 255 STANKML 275
           S++ + L
Sbjct: 354 SSSEEKL 360


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
 Frame = +3

Query: 96  KLNNSAEN--LLKMSKFEDNPFSDPT----IDNPFADPSVQQVARSTNNATRGLEDYNPS 257
           ++NN+  N  LL +S    N  ++      ++      +V  + R++  A    +D N  
Sbjct: 366 RVNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQILGANVNDLIRNSRCANFDNQDNNHY 425

Query: 258 TANKMLIKPRLSNSNQHNRQSCRLCHHQPAASTQ 359
             N    +    + NQ+N Q     HH   ++ +
Sbjct: 426 NHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNR 459


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 436 NGRPRNWRGGKRNSARGRRVATITAA 513
           +G   +W  G+R SA  R V  +  A
Sbjct: 264 SGGTNHWDSGRRKSAAQRNVIRMLVA 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,031
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)