Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0179
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.5  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    27   2.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.5  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   3.3  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    27   3.3  

>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 591 QLVMQMGVIGTTSLPKLPPILGXIHFLMPPLFQSIGLQH 707
           +L++Q   I T +  KL  + G ++FL PPL  S  L H
Sbjct: 323 RLLVQYSPIDTFAEHKLQLVGGLVYFLYPPLGLSEALLH 361


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 542 QEKPKQLFWEKRLEGLTACDANGCNWNYESTKITSNPWGHTL 667
           ++K + +  + +LEGL   D N  N ++ES K + N  G  L
Sbjct: 327 KQKGELVSLDSQLEGLRVDDPNSANQSFESKKASINLEGKEL 368


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/47 (29%), Positives = 30/47 (63%)
 Frame = +1

Query: 166 RKRSDCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSFAVSQSL 306
           RK+++  AL +  ++EE +R++   A K++F+IT  ++ S  V + +
Sbjct: 704 RKKAEREALDRA-KKEEELRESRRQARKLDFLITQTELYSHFVGRKM 749


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 348 FQQGQINTMLLCKAKKARAQFDYRGVRNDASLVPP 452
           F QG+ N ML  +      +FD+RGV+      PP
Sbjct: 554 FYQGRTNIMLYTERAHHFRRFDFRGVKAVVMYGPP 588


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = +2

Query: 554 KQLFWEKRLEGLTACDANGCN---WNYESTKITSNPWGHTLSDATTIPVHWATALSMVSF 724
           K L  EK  + +T  +  G     WNY ST     P   T    TT P+    AL +   
Sbjct: 23  KALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82

Query: 725 PTY 733
           P Y
Sbjct: 83  PLY 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,806
Number of Sequences: 5004
Number of extensions: 75752
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)