Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0179
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1293 + 29077525-29078120,29078592-29078645,29078819-290789... 34 0.12
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613... 33 0.22
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 33 0.38
05_04_0266 - 19558769-19559275,19560852-19560933,19561354-195618... 32 0.66
02_02_0343 + 9163976-9165220 31 1.1
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 31 1.5
04_04_0024 - 22216105-22217856 29 4.6
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 29 6.1
05_04_0138 - 18350298-18350579,18350648-18350878,18350977-183512... 29 6.1
>06_03_1293 +
29077525-29078120,29078592-29078645,29078819-29078970,
29079362-29079639
Length = 359
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDS 326
VYY SPTGKK RS E+ RYL ++
Sbjct: 199 VYYTSPTGKKLRSLVEVGRYLAEN 222
>09_04_0597 -
18859601-18859818,18860914-18861083,18861250-18861303,
18862759-18863284,18864465-18864663,18866787-18866852,
18866999-18867300,18867394-18867634,18867716-18867973,
18868076-18868207
Length = 721
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDSVD 332
VYY SPTG+K RS E+ RYL ++ D
Sbjct: 575 VYYTSPTGRKLRSLVEIDRYLLENPD 600
>04_04_0468 -
25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 372 LCLSDLAESRNTTGPHYHRDNEQALAYCETFYLLDCNNKLNLPCRQTCFSNYFL 211
+CL L + T PH N+ L TFYLL LP +Q C+ + F+
Sbjct: 690 MCLKILLDRSEFTSPHVKLGNDVTLEINSTFYLL-------LPIKQKCYGDRFM 736
>05_04_0266 -
19558769-19559275,19560852-19560933,19561354-19561865,
19563113-19563124
Length = 370
Score = 31.9 bits (69), Expect = 0.66
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGD------SVDLSCFDFQQGQINTMLLCKAKK---ARAQF 410
YY P GK+ + KP++ R+L + ++ LS F+F +I + + K A+++
Sbjct: 98 YYVLPNGKRAKGKPDIDRFLKENPEYAATLPLSSFNFSTPKIVKETVSDSAKWVMAKSER 157
Query: 411 DYRGVRNDASLVPPIRQTASIFKQPVTVYKTQEVKLK 521
+ + ++ DA VP + K V + K E L+
Sbjct: 158 EEQCMQLDAKEVPSSSSKKRVCKMRVKLGKCPEHNLQ 194
>02_02_0343 + 9163976-9165220
Length = 414
Score = 31.1 bits (67), Expect = 1.1
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Frame = -1
Query: 615 LH-PFAS-QAVNPSSLFSQNNCLGFSCVPCLRSVLTLLLEFCRPS--QAV*ILMLFDELV 448
LH P A Q +N + S +C L SV +L L+ C + +L +F L
Sbjct: 53 LHFPLADLQNLNCLTRHSFEDCDNIDNTVVLHSVQSLYLDDCHLTGKSLTMVLSIFPALT 112
Query: 447 ALMRHHYVHPCSQTALVLSWPCTATLCLSDLAESRNTTGPHYHRDNEQALAYCETFYLLD 268
+ +VL P T +LC ++ S+N P Q L+ ++ + D
Sbjct: 113 YFNLRMFGENHDIEEIVLQAPITCSLCHMSISSSKNLVLPVEDGGGLQELSSLQSLRISD 172
Query: 267 CNNKLNLPC 241
C + C
Sbjct: 173 CGRMFSRWC 181
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 612 HPFASQAVNPSSLFSQNNCLGFSCVPCLRSVLTLLLEFCRPSQAV*ILMLFDELV 448
H QA + +LF + G C P + + L+ E CR + V MLFDE++
Sbjct: 271 HCLYGQAEDAFNLFDEMRVTG--CCPTIVTYNILMNELCREGRMVEARMLFDEML 323
>04_04_0024 - 22216105-22217856
Length = 583
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = -1
Query: 618 QLHPFASQAVNPSSLFSQNNCLGFSCVPCLRSVLTLLLEFCRPSQAV*ILMLFDELVALM 439
+L P AS A+ ++F+ +C S P S +++ CR + L LFD++
Sbjct: 118 RLAPCASSAL---AVFTALHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTT-- 172
Query: 438 RHHYVHPCSQTALVLSWPCT 379
H+ P ++ L CT
Sbjct: 173 -HYGYSPDARFLSFLVSSCT 191
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 533 HGTQEKPKQLFW--EKRLEGLTACDANGCNWNYESTKITSNPWGHTLSDATTI 685
H ++ W + +LEGL+ D +GC + I NPW L+D T+
Sbjct: 351 HNATNSMHKIDWPADGKLEGLSVADVDGCFPGLYCSGILRNPW---LTDGQTM 400
>05_04_0138 -
18350298-18350579,18350648-18350878,18350977-18351253,
18351307-18351487,18351612-18351651
Length = 336
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 447 ALMRHHYVHPCSQTALVLSWPCTATLCLSDLAESRNTTGPHYHRDNEQALAY 292
A + HH +H A+V+ CT T +L +R +H E+ +AY
Sbjct: 108 ARLAHHVLHQAHPAAIVVEIACTRT--AEELLGARKAYQALFHHSLEEDVAY 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,479,775
Number of Sequences: 37544
Number of extensions: 462032
Number of successful extensions: 1102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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