Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0179
(843 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35452| Best HMM Match : UK (HMM E-Value=5.7) 53 3e-07
SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1) 40 0.003
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.095
SB_53708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 30 2.7
SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06) 29 4.7
SB_29071| Best HMM Match : BofA (HMM E-Value=8) 28 8.2
>SB_35452| Best HMM Match : UK (HMM E-Value=5.7)
Length = 223
Score = 53.2 bits (122), Expect = 3e-07
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +3
Query: 270 PTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRNDASLVP 449
P GKK RSKP+L + LG VDL+ FDF+ G ++K+ R+Q ++ N A
Sbjct: 2 PDGKKCRSKPQLEKELG-GVDLTDFDFRSG----TFCRRSKRQRSQPNFSRDLNGAIPNS 56
Query: 450 PIRQ-TASIFKQPVTVYKTQEVKLKQI 527
P+RQ T S KQPV+ Y ++ K +++
Sbjct: 57 PVRQSTKSFSKQPVSYYPGRQAKKQKV 83
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +2
Query: 491 GLQNSRSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDA 604
G Q + KV+ +EKPKQLFWEKR++GLTA +A
Sbjct: 75 GRQAKKQKVEPIKTKIDKEKPKQLFWEKRIQGLTAVNA 112
>SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 600
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 172 RSDCSALPKGWQREEVVRKTGLSAGK 249
R C +LPKGW RE V+RK+G+SAG+
Sbjct: 568 RVTCPSLPKGWLREIVLRKSGVSAGR 593
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 36.3 bits (80), Expect = 0.031
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 240 GREG*VYYYSPTGKKFRSKPELVRYL 317
G G V+Y++P GKK R+ PE+ RYL
Sbjct: 512 GSRGDVFYFAPCGKKLRTYPEVARYL 537
>SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 34.7 bits (76), Expect = 0.095
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDS-VDLSCFDFQQGQINTMLLCKAKK 395
VY P G+KFRSK EL R+L S DL+ DF Q M++ KK
Sbjct: 372 VYIVDPDGRKFRSKAELKRFLDKSQSDLTIEDF-DFQHKKMVITSNKK 418
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 190 LPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
+PKGW R E VRK G + G+V+ + + K F
Sbjct: 159 VPKGWTRTEYVRKGGRTQGRVDVTVINPEGKQF 191
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 190 LPKGWQREEVVRKTGLSAGKVEFII 264
LPKGW++ V RK+G + G V+ I
Sbjct: 8 LPKGWKKVCVTRKSGKTKGHVDVYI 32
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL 317
VY + P G+KFRS EL R+L
Sbjct: 30 VYIHDPLGRKFRSLAELKRHL 50
>SB_53708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -1
Query: 429 YVHPCSQTALVLSWPCT-ATLCLSDLAESRNTTGPHYHRDNE 307
Y C W CT A ++++ S NTT HYH ++
Sbjct: 203 YTETCEGALNGKGWDCTKAKTLIAEMENSLNTTDQHYHNTDQ 244
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 618 GTTSLPKLPPILGXIHFLMPPLFQSIGLQHFPWYLSQPITG 740
GT L + +HFLMP LFQS + F + S P+TG
Sbjct: 933 GTPLQNSLMELWSLMHFLMPHLFQS--HKDFKEWFSNPLTG 971
>SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06)
Length = 230
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 536 GTQEKPKQLFWEKRLEGLTACDANGCNW-NYESTKITSNPWG 658
G + P +L KR+ L C N+ NY T ITSN WG
Sbjct: 153 GNKNHPSKLDL-KRMNELYGCSEQNDNYENYIVTVITSNSWG 193
>SB_29071| Best HMM Match : BofA (HMM E-Value=8)
Length = 90
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -2
Query: 152 FIFTVYFFLLNKSNHNNIPISI*RMF*VCTYYTFYVNTETGM 27
F+ + FL+++ + ++ + R+F +C Y+ F+ NT G+
Sbjct: 15 FLLAKFVFLIDRGS--SMSLDNRRLFHICAYFLFFFNTFLGL 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,594,740
Number of Sequences: 59808
Number of extensions: 555217
Number of successful extensions: 1337
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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