Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0179
(843 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF072247-1|AAC68876.1| 291|Homo sapiens methyl-CpG binding doma... 88 4e-17
AC005943-1|AAC72104.1| 291|Homo sapiens methyl-CpG binding prot... 88 4e-17
BC032638-1|AAH32638.1| 411|Homo sapiens methyl-CpG binding doma... 86 2e-16
AF120993-1|AAD56597.1| 411|Homo sapiens methyl-CpG binding prot... 86 2e-16
AF072242-1|AAC68871.1| 411|Homo sapiens methyl-CpG binding prot... 86 2e-16
BC043619-1|AAH43619.1| 259|Homo sapiens MBD3 protein protein. 79 2e-14
BC009372-1|AAH09372.1| 259|Homo sapiens MBD3 protein protein. 79 2e-14
AF120989-1|AAD56596.1| 302|Homo sapiens testis-specific methyl-... 66 2e-10
AF072246-1|AAC68875.1| 146|Homo sapiens testis specific methyl-... 66 2e-10
Y10746-1|CAA71735.1| 556|Homo sapiens methyl-CpG binding protei... 52 3e-06
EF488685-1|ABP02056.1| 536|Homo sapiens methyl-CpG binding doma... 52 3e-06
BC033242-1|AAH33242.1| 549|Homo sapiens methyl-CpG binding doma... 52 3e-06
AJ564845-1|CAD92308.1| 550|Homo sapiens methyl-CpG binding doma... 52 3e-06
AF120981-1|AAD50371.1| 605|Homo sapiens methyl-CpG binding prot... 52 3e-06
AF078833-1|AAD51445.1| 503|Homo sapiens methyl-CpG binding prot... 52 3e-06
AF078832-1|AAD51444.1| 549|Homo sapiens methyl-CpG binding prot... 52 3e-06
AF078831-1|AAD51443.1| 586|Homo sapiens methyl-CpG binding prot... 52 3e-06
AF078830-1|AAD51442.1| 605|Homo sapiens methyl-CpG binding prot... 52 3e-06
AF039701-1|AAC18050.1| 200|Homo sapiens antigen NY-CO-41 protein. 40 0.009
Y12643-1|CAA73190.1| 486|Homo sapiens methyl-CpG binding protei... 36 0.14
X99686-1|CAA68001.1| 486|Homo sapiens methyl-CpG-binding protei... 36 0.14
X94628-1|CAA64331.1| 477|Homo sapiens methyl-CpG-binding prote... 36 0.14
X89430-1|CAA61599.1| 476|Homo sapiens methyl CpG binding protei... 36 0.14
L37298-1|AAC32737.1| 486|Homo sapiens methyl-CpG-binding protei... 36 0.14
BX538060-1|CAD97991.1| 516|Homo sapiens hypothetical protein pr... 36 0.14
BC011612-1|AAH11612.1| 486|Homo sapiens methyl CpG binding prot... 36 0.14
BC009438-1|AAH09438.1| 174|Homo sapiens MBD3 protein protein. 36 0.14
AY541280-1|AAS55455.1| 498|Homo sapiens methyl CpG binding prot... 36 0.14
AJ132917-1|CAB46446.1| 486|Homo sapiens Methyl-CpG-binding prot... 36 0.14
AF158180-1|AAF33023.1| 486|Homo sapiens methyl CpG binding prot... 36 0.14
AF030876-2|AAC08757.1| 486|Homo sapiens Methyl-CpG binding prot... 36 0.14
BC012576-1|AAH12576.1| 643|Homo sapiens BAZ2B protein protein. 34 0.56
AB032255-1|BAA89212.1| 1972|Homo sapiens bromodomain adjacent to... 34 0.56
BC032443-1|AAH32443.1| 170|Homo sapiens MBD3 protein protein. 33 1.3
AF000422-1|AAB60864.1| 407|Homo sapiens TTF-I interacting pepti... 32 2.3
AB002312-1|BAA20773.2| 1899|Homo sapiens KIAA0314 protein protein. 32 2.3
AB032254-1|BAA89211.1| 1878|Homo sapiens bromodomain adjacent to... 31 5.2
CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein. 31 6.9
BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein. 31 6.9
AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding doma... 31 6.9
AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding doma... 31 6.9
AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding prot... 31 6.9
AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding endo... 31 6.9
AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding prot... 31 6.9
>AF072247-1|AAC68876.1| 291|Homo sapiens methyl-CpG binding
domain-containing protein MBD3 protein.
Length = 291
Score = 87.8 bits (208), Expect = 4e-17
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGV--- 425
V+YYSP+GKKFRSKP+L RYLG S+DLS FDF+ G+ ML+ K K+R + Y
Sbjct: 33 VFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGK---MLMSKMNKSRQRVRYDSSNQV 89
Query: 426 --RNDASLVPPIRQTASIFKQPVT 491
+ D + P+RQTASIFKQPVT
Sbjct: 90 KGKPDLNTALPVRQTASIFKQPVT 113
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = +1
Query: 160 IERKRSDCSALPKGWQREEVVRKTGLSAG 246
+ERKR +C ALP+GW+REEV R++GLSAG
Sbjct: 1 MERKRWECPALPQGWEREEVPRRSGLSAG 29
Score = 36.3 bits (80), Expect = 0.14
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + ++P+QLFWEK+L GL A D
Sbjct: 121 NKVKSDPQKAV-DQPRQLFWEKKLSGLNAFD 150
>AC005943-1|AAC72104.1| 291|Homo sapiens methyl-CpG binding protein
MBD3 protein.
Length = 291
Score = 87.8 bits (208), Expect = 4e-17
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGV--- 425
V+YYSP+GKKFRSKP+L RYLG S+DLS FDF+ G+ ML+ K K+R + Y
Sbjct: 33 VFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGK---MLMSKMNKSRQRVRYDSSNQV 89
Query: 426 --RNDASLVPPIRQTASIFKQPVT 491
+ D + P+RQTASIFKQPVT
Sbjct: 90 KGKPDLNTALPVRQTASIFKQPVT 113
Score = 49.2 bits (112), Expect = 2e-05
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = +1
Query: 160 IERKRSDCSALPKGWQREEVVRKTGLSAG 246
+ERKR +C ALP+GW+REEV R++GLSAG
Sbjct: 1 MERKRWECPALPQGWEREEVPRRSGLSAG 29
Score = 36.3 bits (80), Expect = 0.14
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + ++P+QLFWEK+L GL A D
Sbjct: 121 NKVKSDPQKAV-DQPRQLFWEKKLSGLNAFD 150
>BC032638-1|AAH32638.1| 411|Homo sapiens methyl-CpG binding domain
protein 2 protein.
Length = 411
Score = 85.8 bits (203), Expect = 2e-16
Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKK--ARAQFDYRGVR 428
VYY+SP+GKKFRSKP+L RYLG++VDLS FDF+ G++ L K K+ + +
Sbjct: 177 VYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQNKGK 236
Query: 429 NDASLVPPIRQTASIFKQPVT 491
D + PIRQTASIFKQPVT
Sbjct: 237 PDLNTTLPIRQTASIFKQPVT 257
Score = 50.0 bits (114), Expect = 1e-05
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +1
Query: 169 KRSDCSALPKGWQREEVVRKTGLSAGK 249
KR DC ALP GW++EEV+RK+GLSAGK
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGK 174
Score = 40.3 bits (90), Expect = 0.009
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + E+P+QLFWEKRL+GL+A D
Sbjct: 265 NKVKSDPQR-MNEQPRQLFWEKRLQGLSASD 294
>AF120993-1|AAD56597.1| 411|Homo sapiens methyl-CpG binding protein
2 protein.
Length = 411
Score = 85.8 bits (203), Expect = 2e-16
Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKK--ARAQFDYRGVR 428
VYY+SP+GKKFRSKP+L RYLG++VDLS FDF+ G++ L K K+ + +
Sbjct: 177 VYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQNKGK 236
Query: 429 NDASLVPPIRQTASIFKQPVT 491
D + PIRQTASIFKQPVT
Sbjct: 237 PDLNTTLPIRQTASIFKQPVT 257
Score = 50.0 bits (114), Expect = 1e-05
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +1
Query: 169 KRSDCSALPKGWQREEVVRKTGLSAGK 249
KR DC ALP GW++EEV+RK+GLSAGK
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGK 174
Score = 40.3 bits (90), Expect = 0.009
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + E+P+QLFWEKRL+GL+A D
Sbjct: 265 NKVKSDPQR-MNEQPRQLFWEKRLQGLSASD 294
>AF072242-1|AAC68871.1| 411|Homo sapiens methyl-CpG binding protein
MBD2 protein.
Length = 411
Score = 85.8 bits (203), Expect = 2e-16
Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKK--ARAQFDYRGVR 428
VYY+SP+GKKFRSKP+L RYLG++VDLS FDF+ G++ L K K+ + +
Sbjct: 177 VYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQNKGK 236
Query: 429 NDASLVPPIRQTASIFKQPVT 491
D + PIRQTASIFKQPVT
Sbjct: 237 PDLNTTLPIRQTASIFKQPVT 257
Score = 50.0 bits (114), Expect = 1e-05
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +1
Query: 169 KRSDCSALPKGWQREEVVRKTGLSAGK 249
KR DC ALP GW++EEV+RK+GLSAGK
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGK 174
Score = 40.3 bits (90), Expect = 0.009
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + E+P+QLFWEKRL+GL+A D
Sbjct: 265 NKVKSDPQR-MNEQPRQLFWEKRLQGLSASD 294
>BC043619-1|AAH43619.1| 259|Homo sapiens MBD3 protein protein.
Length = 259
Score = 79.4 bits (187), Expect = 2e-14
Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +3
Query: 267 SPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGV-----RN 431
SP+GKKFRSKP+L RYLG S+DLS FDF+ G+ ML+ K K+R + Y +
Sbjct: 5 SPSGKKFRSKPQLARYLGGSMDLSTFDFRTGK---MLMSKMNKSRQRVRYDSSNQVKGKP 61
Query: 432 DASLVPPIRQTASIFKQPVT 491
D + P+RQTASIFKQPVT
Sbjct: 62 DLNTALPVRQTASIFKQPVT 81
Score = 36.3 bits (80), Expect = 0.14
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + ++P+QLFWEK+L GL A D
Sbjct: 89 NKVKSDPQKAV-DQPRQLFWEKKLSGLNAFD 118
>BC009372-1|AAH09372.1| 259|Homo sapiens MBD3 protein protein.
Length = 259
Score = 79.4 bits (187), Expect = 2e-14
Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = +3
Query: 267 SPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGV-----RN 431
SP+GKKFRSKP+L RYLG S+DLS FDF+ G+ ML+ K K+R + Y +
Sbjct: 5 SPSGKKFRSKPQLARYLGGSMDLSTFDFRTGK---MLMSKMNKSRQRVRYDSSNQVKGKP 61
Query: 432 DASLVPPIRQTASIFKQPVT 491
D + P+RQTASIFKQPVT
Sbjct: 62 DLNTALPVRQTASIFKQPVT 81
Score = 36.3 bits (80), Expect = 0.14
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + ++P+QLFWEK+L GL A D
Sbjct: 89 NKVKSDPQKAV-DQPRQLFWEKKLSGLNAFD 118
>AF120989-1|AAD56596.1| 302|Homo sapiens testis-specific methyl-CpG
binding protein 2 protein.
Length = 302
Score = 65.7 bits (153), Expect = 2e-10
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKK 395
VYY+SP+GKKFRSKP+L RYLG++VDLS FDF+ G++ L K K+
Sbjct: 177 VYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQ 223
Score = 50.0 bits (114), Expect = 1e-05
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +1
Query: 169 KRSDCSALPKGWQREEVVRKTGLSAGK 249
KR DC ALP GW++EEV+RK+GLSAGK
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGK 174
>AF072246-1|AAC68875.1| 146|Homo sapiens testis specific methyl-CpG
binding protein MBD2 protein.
Length = 146
Score = 65.7 bits (153), Expect = 2e-10
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKK 395
VYY+SP+GKKFRSKP+L RYLG++VDLS FDF+ G++ L K K+
Sbjct: 21 VYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQ 67
Score = 35.1 bits (77), Expect = 0.32
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 199 GWQREEVVRKTGLSAGK 249
GW++EEV+RK+GLSAGK
Sbjct: 2 GWKKEEVIRKSGLSAGK 18
>Y10746-1|CAA71735.1| 556|Homo sapiens methyl-CpG binding protein
protein.
Length = 556
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>EF488685-1|ABP02056.1| 536|Homo sapiens methyl-CpG binding domain
protein 1 variant 8 protein.
Length = 536
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>BC033242-1|AAH33242.1| 549|Homo sapiens methyl-CpG binding domain
protein 1 protein.
Length = 549
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>AJ564845-1|CAD92308.1| 550|Homo sapiens methyl-CpG binding domain
protein 1, splice form 6 protein.
Length = 550
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>AF120981-1|AAD50371.1| 605|Homo sapiens methyl-CpG binding protein
1 protein.
Length = 605
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>AF078833-1|AAD51445.1| 503|Homo sapiens methyl-CpG binding protein
splice variant 4 protein.
Length = 503
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>AF078832-1|AAD51444.1| 549|Homo sapiens methyl-CpG binding protein
splice variant 3 protein.
Length = 549
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>AF078831-1|AAD51443.1| 586|Homo sapiens methyl-CpG binding protein
splice variant 2 protein.
Length = 586
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>AF078830-1|AAD51442.1| 605|Homo sapiens methyl-CpG binding protein
splice variant 1 protein.
Length = 605
Score = 51.6 bits (118), Expect = 3e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQG 359
YY SPTG + RSK EL RYLG + DL+ FDF+QG
Sbjct: 34 YYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQG 67
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGK 249
DC AL GW+R EV RK+G + G+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGR 30
>AF039701-1|AAC18050.1| 200|Homo sapiens antigen NY-CO-41 protein.
Length = 200
Score = 40.3 bits (90), Expect = 0.009
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + E+P+QLFWEKRL+GL+A D
Sbjct: 54 NKVKSDPQR-MNEQPRQLFWEKRLQGLSASD 83
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3
Query: 432 DASLVPPIRQTASIFKQPVT 491
D + PIRQTASIFKQPVT
Sbjct: 27 DLNTTLPIRQTASIFKQPVT 46
>Y12643-1|CAA73190.1| 486|Homo sapiens methyl-CpG binding protein 2
protein.
Length = 486
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 105 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 157
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 132
>X99686-1|CAA68001.1| 486|Homo sapiens methyl-CpG-binding protein 2
protein.
Length = 486
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 105 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 157
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 132
>X94628-1|CAA64331.1| 477|Homo sapiens methyl-CpG-binding protein
protein.
Length = 477
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 96 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 148
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 87 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 123
>X89430-1|CAA61599.1| 476|Homo sapiens methyl CpG binding protein 2
protein.
Length = 476
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 95 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 147
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 86 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 122
>L37298-1|AAC32737.1| 486|Homo sapiens methyl-CpG-binding protein
protein.
Length = 486
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 105 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 157
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 132
>BX538060-1|CAD97991.1| 516|Homo sapiens hypothetical protein
protein.
Length = 516
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 135 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 187
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 126 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 162
>BC011612-1|AAH11612.1| 486|Homo sapiens methyl CpG binding protein
2 (Rett syndrome) protein.
Length = 486
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 105 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 157
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 132
>BC009438-1|AAH09438.1| 174|Homo sapiens MBD3 protein protein.
Length = 174
Score = 36.3 bits (80), Expect = 0.14
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 509 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 601
+KVK+D + ++P+QLFWEK+L GL A D
Sbjct: 4 NKVKSDPQKAV-DQPRQLFWEKKLSGLNAFD 33
>AY541280-1|AAS55455.1| 498|Homo sapiens methyl CpG binding protein
2 isoform B protein.
Length = 498
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 117 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 169
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 108 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 144
>AJ132917-1|CAB46446.1| 486|Homo sapiens Methyl-CpG-binding protein
2 protein.
Length = 486
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 105 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 157
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 132
>AF158180-1|AAF33023.1| 486|Homo sapiens methyl CpG binding protein
2 protein.
Length = 486
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 105 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 157
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 132
>AF030876-2|AAC08757.1| 486|Homo sapiens Methyl-CpG binding protein
2 protein.
Length = 486
Score = 36.3 bits (80), Expect = 0.14
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 192 TQRLAKRGSS*KNRSVGREG*VYYYSPTGKKFRSKPELVRY---LGD-SVDLSCFDF 350
T++L +R S RS G+ VY +P GK FRSK EL+ Y +GD S+D + FDF
Sbjct: 105 TRKLKQRKSG---RSAGKYD-VYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDF 157
Score = 33.5 bits (73), Expect = 0.98
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 178 DCSALPKGWQREEVVRKTGLSAGKVEFIITVQQVKSF 288
D LP+GW R+ RK+G SAGK + + Q K+F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAF 132
>BC012576-1|AAH12576.1| 643|Homo sapiens BAZ2B protein protein.
Length = 643
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 246 EG*VYYYSPTGKKFRSKPELVRYL 317
+G V YY+P GKK R PE+++YL
Sbjct: 473 QGEVAYYAPCGKKLRQYPEVIKYL 496
>AB032255-1|BAA89212.1| 1972|Homo sapiens bromodomain adjacent to
zinc finger domain 2B protein.
Length = 1972
Score = 34.3 bits (75), Expect = 0.56
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 246 EG*VYYYSPTGKKFRSKPELVRYL 317
+G V YY+P GKK R PE+++YL
Sbjct: 571 QGEVAYYAPCGKKLRQYPEVIKYL 594
>BC032443-1|AAH32443.1| 170|Homo sapiens MBD3 protein protein.
Length = 170
Score = 33.1 bits (72), Expect = 1.3
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 545 EKPKQLFWEKRLEGLTACD 601
++P+QLFWEK+L GL A D
Sbjct: 11 DQPRQLFWEKKLSGLNAFD 29
>AF000422-1|AAB60864.1| 407|Homo sapiens TTF-I interacting peptide
5 protein.
Length = 407
Score = 32.3 bits (70), Expect = 2.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 246 EG*VYYYSPTGKKFRSKPELVRYLGDSV 329
+G +YY P GK+ + PE+++YL +V
Sbjct: 216 QGETWYYGPCGKRMKQFPEVIKYLSRNV 243
>AB002312-1|BAA20773.2| 1899|Homo sapiens KIAA0314 protein protein.
Length = 1899
Score = 32.3 bits (70), Expect = 2.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 246 EG*VYYYSPTGKKFRSKPELVRYLGDSV 329
+G +YY P GK+ + PE+++YL +V
Sbjct: 568 QGETWYYGPCGKRMKQFPEVIKYLSRNV 595
>AB032254-1|BAA89211.1| 1878|Homo sapiens bromodomain adjacent to
zinc finger domain 2A protein.
Length = 1878
Score = 31.1 bits (67), Expect = 5.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 246 EG*VYYYSPTGKKFRSKPELVRYL 317
+G +YY P GK+ + PE+++YL
Sbjct: 547 QGETWYYGPCGKRMKQFPEVIKYL 570
>CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein.
Length = 574
Score = 30.7 bits (66), Expect = 6.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL 317
VY+ SP G KFRSK L YL
Sbjct: 108 VYFISPQGLKFRSKSSLANYL 128
>BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein.
Length = 574
Score = 30.7 bits (66), Expect = 6.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL 317
VY+ SP G KFRSK L YL
Sbjct: 108 VYFISPQGLKFRSKSSLANYL 128
>AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding domain
protein 4 variant protein.
Length = 540
Score = 30.7 bits (66), Expect = 6.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL 317
VY+ SP G KFRSK L YL
Sbjct: 108 VYFISPQGLKFRSKSSLANYL 128
>AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding domain
protein 4 protein.
Length = 580
Score = 30.7 bits (66), Expect = 6.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL 317
VY+ SP G KFRSK L YL
Sbjct: 108 VYFISPQGLKFRSKSSLANYL 128
>AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding protein
4 protein.
Length = 580
Score = 30.7 bits (66), Expect = 6.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL 317
VY+ SP G KFRSK L YL
Sbjct: 108 VYFISPQGLKFRSKSSLANYL 128
>AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding
endonuclease protein.
Length = 580
Score = 30.7 bits (66), Expect = 6.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL 317
VY+ SP G KFRSK L YL
Sbjct: 108 VYFISPQGLKFRSKSSLANYL 128
>AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding protein
MBD4 protein.
Length = 580
Score = 30.7 bits (66), Expect = 6.9
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL 317
VY+ SP G KFRSK L YL
Sbjct: 108 VYFISPQGLKFRSKSSLANYL 128
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,426,075
Number of Sequences: 237096
Number of extensions: 2736835
Number of successful extensions: 9435
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 9206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9425
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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