Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0179
(843 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing pr... 34 0.10
At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing pr... 34 0.10
At1g75730.1 68414.m08797 expressed protein 31 0.72
At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing pr... 31 0.96
At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing pr... 30 1.7
At3g46580.1 68416.m05056 methyl-CpG-binding domain-containing pr... 30 1.7
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 30 2.2
At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing pr... 29 5.1
At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 8.9
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 28 8.9
At2g31750.1 68415.m03877 UDP-glucoronosyl/UDP-glucosyl transfera... 28 8.9
At1g64050.1 68414.m07255 expressed protein 28 8.9
>At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing
protein similar to methyl-CpG binding protein MBD4 [Mus
musculus] GI:3800807; contains Pfam profile PF01429:
Methyl-CpG binding domain
Length = 272
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL-------GDSVDLSCFDFQ 353
VYY +P+GKK RS E+ +YL G+ V LS F FQ
Sbjct: 149 VYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQ 188
>At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing
protein similar to methyl-CpG binding protein MBD4 [Mus
musculus] GI:3800807; contains Pfam profile PF01429:
Methyl-CpG binding domain
Length = 272
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +3
Query: 255 VYYYSPTGKKFRSKPELVRYL-------GDSVDLSCFDFQ 353
VYY +P+GKK RS E+ +YL G+ V LS F FQ
Sbjct: 149 VYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQ 188
>At1g75730.1 68414.m08797 expressed protein
Length = 589
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -1
Query: 723 KDTMESAVAQWTGIVVASESVXPQGLEVILVDS*FQLHPFASQAVNPSSLFSQNNC 556
K T + +A W G+ S + G +V+ S +L P+ QAV+PS+ S NC
Sbjct: 255 KVTTSNGLALWPGL---SSTTVHSGAQVLSKPSSTKLPPWMGQAVSPSNTASLLNC 307
>At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing
protein similar to testis specific methyl-CpG binding
protein MBD2 [Homo sapiens] GI:3800801; contains Pfam
profile PF01429: Methyl-CpG binding domain
Length = 225
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = +3
Query: 258 YYYSP-TGKKFRSKPELVRYL 317
YYY P TG+KFRS+ E++ YL
Sbjct: 104 YYYEPNTGRKFRSRTEVLYYL 124
>At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 186
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYL 317
YY++PTGKK RS+ E+ ++
Sbjct: 113 YYFTPTGKKLRSRNEIAAFV 132
>At3g46580.1 68416.m05056 methyl-CpG-binding domain-containing
protein weak similarity to SP|P51608 Methyl-CpG-binding
protein 2 (MeCP-2 protein) (MeCP2) {Homo sapiens};
contains Pfam profile PF01429: Methyl-CpG binding domain
Length = 182
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = +3
Query: 258 YYYSP-TGKKFRSKPELVRYL 317
+YY P TG+KFRSK E++ YL
Sbjct: 58 FYYEPITGRKFRSKNEVLYYL 78
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 497 QNSRSKVKTDLKHGTQEKPKQLFWE--KRLEGLTACDANGCNWNYESTK 637
++S SKV TDL + +KPK+L E KR E A+G + + + K
Sbjct: 290 ESSDSKVVTDLNIASSKKPKELLKEKKKRFENELGKSASGADESKRAAK 338
>At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 204
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 258 YYYSPTGKKFRSKPELVRYLGDSVD 332
YY +PTGKK +S+ E+ ++ + D
Sbjct: 140 YYITPTGKKLKSRNEIAAFIDANQD 164
>At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|Q9ZWQ9 Flavonol synthase
(EC 1.14.11.-) {Citrus unshiu}; contains Pfam profile
PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 364
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 465 LFDELVALMRHHYVHPCSQTALVLSW-PCTATLCLSDLAESRNT-TGPHYHRDN 310
+F E V +R +Y PCS LVL P + L+ L +S+N+ G +DN
Sbjct: 207 MFGEAVQAVRMNYYPPCSSPDLVLGLSPHSDGSALTVLQQSKNSCVGLQILKDN 260
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 YYSPTGKKFRSKPELVRYLGDSV--DLSCFDFQQGQINTML 377
Y +P GK F S E+ YLG ++ + SC D + N++L
Sbjct: 289 YCAPNGKTFSSIQEVACYLGLAINGNYSCMDAEIRNENSLL 329
>At2g31750.1 68415.m03877 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -2
Query: 239 DRPVFLTTSSLCQPLGNAEQSDRFLSIDMFIFTVYFFLLNKSNHNNIPI 93
D PVFL ++LC+PL S +F+++D + FFL+N + + +
Sbjct: 173 DLPVFLYDNNLCRPLFEL-ISSQFVNVD----DIDFFLVNSFDELEVEV 216
>At1g64050.1 68414.m07255 expressed protein
Length = 668
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 696 GLQHFPWYLSQPITGANXVRNXAXK 770
GL HFPW SQP G++ + A K
Sbjct: 387 GLPHFPW--SQPFNGSSRTNSEAAK 409
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,510,781
Number of Sequences: 28952
Number of extensions: 391828
Number of successful extensions: 973
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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