Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0178
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    71   2e-13
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    35   0.015
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    32   0.079
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    31   0.18 
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   3.0  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   3.9  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    27   3.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.2  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   6.9  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    26   6.9  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   6.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.1  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 58/157 (36%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
 Frame = +3

Query: 258 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFG 434
           +A+S +F +P +   K LVVQ+ V  E+ ++CGG YLK+   +    +M     Y IMFG
Sbjct: 101 HAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFG 159

Query: 435 PDICGPGTKKVHVIFSYKGKNHLIKKISAAKMMSTHICTL--*L*NL-TTPMKSSLTMRK 605
           PD CG    +VH IF  K KN L  + S   + S     L   + NL T  +K   T   
Sbjct: 160 PDKCGV-NDRVHFIF--KHKNPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEV 216

Query: 606 LNLGDLEAD----WDF----LPPKKIKDPEAKKPEDW 692
              GD+       +DF    LPP +I DPE  KP DW
Sbjct: 217 RINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADW 253



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +2

Query: 539 THLYTLIVKPDNTYEVLIDNEKVESG 616
           T+LYTLIVKPD T+EV I+ + V  G
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQG 226



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DWD   P+ I DP+A KPEDW
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDW 289



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DW    P  I DPEA+KPEDW
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = -3

Query: 281 FELTGESIE-LASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFS 108
           + +T  S E   SSE F   S+S SL   P VN +   S    + ++ L S + S+ NF+
Sbjct: 466 YSVTPTSAENYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFT 522

Query: 107 SKNTSQFIEDNASKLTTTSTT 45
           S ++S  + +  S L+T STT
Sbjct: 523 SASSSLSLTNAKSSLSTPSTT 543


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 32.3 bits (70), Expect = 0.079
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 303 PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 482
           P+V+ F VK  +   CG  Y+ +   +   K++  E P  I FG   CG        I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161

Query: 483 YKGK 494
           Y GK
Sbjct: 162 YDGK 165


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -3

Query: 281 FELTGESIELASS---EVFKPLSSSGSLKNFPAVNLNFPNSFP 162
           F+LTGES   ++S   E F+P   + SL N P +N ++ ++ P
Sbjct: 674 FKLTGESSNGSNSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 188 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 57
           N N    F      + + S  +SGNFS   T Q   DN S  +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 308 QGFTLITERFELTGESIELASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSH 129
           + + L+  R      SI+  S    + LS+   LK   +++  FP SFP   +Y   + +
Sbjct: 116 KSYCLVDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILN 175

Query: 128 ESS 120
           +SS
Sbjct: 176 DSS 178


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 109 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDAS 255
           + F +D  + +W   EH  K   ++   + + FS+  DD+  + SE ++
Sbjct: 49  QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESSA 96


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 208 SDPEDDKGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTS 366
           S+PE++K LKT E + +  SPV+  +  +  N   S++ S    ++   + T+
Sbjct: 486 SEPENEKKLKTEETSKTDDSPVTDAKPDVTSNGEPSTATSESKDSVLEPSSTT 538


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
 Frame = -3

Query: 479 EDYVYLLGSRTTNVRAEHNLIWSLSVHVLL-LQFAVKDLEVSASTVNVLFMFDSELDYQG 303
           ED V   G  +    + HNL+ S+    L      ++D  V   T N+    +++LD+  
Sbjct: 154 EDEVINEGLESEIDGSSHNLLDSILQKCLASTSVLMQDALVYIGTANMSTRLEAKLDFMS 213

Query: 302 FTLITERFELTGESIELASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHES 123
           F+ +         +I   +  + +P+S S +  + P  +     S    S   +   ++ 
Sbjct: 214 FSSVKSNSTSRLLNINGITVSMVRPISKSNAGSSSPPRSEESFVSMDSSSSIVEGFENDL 273

Query: 122 SGNFSSKNTSQFIEDN 75
           S +  + N S  I  N
Sbjct: 274 SPSQVTLNESSIISSN 289


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 106 EEKFPDDSWESNWVYS 153
           EEKFPD +W  +W  S
Sbjct: 251 EEKFPDIAWRVSWSLS 266


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DWD +P ++ K  EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 223 DKGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTSRSLTANWSRRT 399
           D   KT  D    +  +SS    +   P  SSS ++ +   T    T + L A W R+T
Sbjct: 401 DNKSKTHLDTFEKVVDLSSKADFVEAGPSISSSGASSSAATTNSDTTEQILEAPWLRKT 459


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 151 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 59
           C P  FP N+QE      H+    I  AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,769
Number of Sequences: 5004
Number of extensions: 74654
Number of successful extensions: 266
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)