Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0178
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                59   3e-09
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.063
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)           30   1.8  
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_50622| Best HMM Match : Omega-toxin (HMM E-Value=3.1)               28   9.6  
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)             28   9.6  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 28   9.6  
SB_5367| Best HMM Match : wnt (HMM E-Value=0)                          28   9.6  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/52 (61%), Positives = 36/52 (69%)
 Frame = +1

Query: 97  VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 252
           V F EKF D SWE  WV S   G + GKFK TAGKF+ D E DKG++TSEDA
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDA 807



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 29/40 (72%), Positives = 35/40 (87%), Gaps = 1/40 (2%)
 Frame = +3

Query: 252 EFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 368
           +FY +S KF KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 808 KFYGISAKFEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847



 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 30/43 (69%), Positives = 34/43 (79%), Gaps = 5/43 (11%)
 Frame = +2

Query: 503 HQKDIRC-----KDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 616
           H+++I C     KDD  THLYTLIV+PDNTYEV IDNEKVESG
Sbjct: 835 HEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESG 877



 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 28/52 (53%), Positives = 34/52 (65%)
 Frame = +3

Query: 537  THICTL*L*NLTTPMKSSLTMRKLNLGDLEADWDFLPPKKIKDPEAKKPEDW 692
            TH+ TL +       +  +   K+  G+LE DWDFLPPK IKDPEAKKPEDW
Sbjct: 852  THLYTL-IVRPDNTYEVKIDNEKVESGELEKDWDFLPPKTIKDPEAKKPEDW 902



 Score = 35.5 bits (78), Expect = 0.048
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DWD   P+ I DP+AKKPEDW
Sbjct: 918 DWD--KPQNIPDPDAKKPEDW 936


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
 Frame = +3

Query: 378 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKISAAKM-------- 530
           C L Q+    +TPY IMFGPD CG   +K+H IF +K  KN  I++  A K         
Sbjct: 28  CHLFQESFGDKTPYTIMFGPDKCGE-DRKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86

Query: 531 --MSTHICTL*L*NLTTPMKSSLTMRKLNLGDLEADW--DFLPPKKIKDPEAKKPEDW 692
               TH+ TL +       +  +    +N G L  D      PP +I+DP+ K+PEDW
Sbjct: 87  DGKKTHLFTL-VVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDKRPEDW 143



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +2

Query: 527 DDVYTHLYTLIVKPDNTYEVLIDNEKVESG 616
           D   THL+TL+V+PDNT+EV ID E V  G
Sbjct: 87  DGKKTHLFTLVVRPDNTFEVFIDQESVNKG 116



 Score = 31.9 bits (69), Expect = 0.59
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DWD   P KI D  AKKPE W
Sbjct: 159 DWDEDAPVKIPDTNAKKPEGW 179



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DWD    +KI DP+A+KP+DW
Sbjct: 142 DWD--EREKIPDPDAEKPDDW 160


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 355 PPQSMSCSCLTVNWTTKGLPSLLNG 281
           P +  SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453


>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
          Length = 1873

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 94   DVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDASSMLSPV 273
            +VF   +  D +  + +++ E  G   G   L AG     P   +G    ED+SSM   +
Sbjct: 950  EVFTIGQVYDHTTPTAYIFHEWDGDALGGAPLRAGATEVYPRGSRGNTMGEDSSSMYVTL 1009

Query: 274  SSN 282
            SSN
Sbjct: 1010 SSN 1012


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 523 AADIFLMRWFLPL*LKITCTFLVPGPQMSGPNIISYGV 410
           AAD   +RW   L  +IT   +V G + SGP I+  GV
Sbjct: 567 AADFSFVRWVQSLAERITSRVVVEGQKRSGP-IVDLGV 603


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 159 VLTVHPIAFPRIIRKLLLKEYI 94
           +LT H +  P++IRK+ LK+Y+
Sbjct: 73  LLTAHLVVAPKLIRKMPLKDYV 94


>SB_50622| Best HMM Match : Omega-toxin (HMM E-Value=3.1)
          Length = 320

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 85  INCDVFFEEKFPDDSWESNWVYSEHPG-KEFGKFKLTAGKFFSDPEDDKGLKTSEDASSM 261
           IN ++  +EK P    E +W+  + P  K++   ++   +  S+  + +G ++ E   + 
Sbjct: 132 INFNITVKEKIPFFQEEEDWIDFQQPAEKDYSGLRIQTLQ-ISEKSEQEGAESCEQEEND 190

Query: 262 LSPVSSNRSVMRVNPW*SSS 321
            +     R     NPW S +
Sbjct: 191 ENGDGGQRKDKSNNPWQSGT 210


>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
          Length = 818

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 148 YSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDASSM 261
           +     K+ GKFK  AG+  +D  +D G +  EDAS +
Sbjct: 550 HKRRKSKDGGKFK--AGESTADSHEDSGKEQEEDASKV 585


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 226 KGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTS--RSLTAN 384
           K LKTS   S  +SP +S ++  + +P  +S  +++N +L     TS  RSL  N
Sbjct: 360 KSLKTSPKTSPEISPRTSPKTSSKTSPK-TSLKTSLNTSLNTSQKTSLKRSLNTN 413


>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
          Length = 367

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 614 QIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 519
           ++Q + C+   H CC+V    C      H+C+
Sbjct: 336 EVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,384,687
Number of Sequences: 59808
Number of extensions: 574659
Number of successful extensions: 1603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)