Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0178
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   174   7e-44
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   174   7e-44
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    75   4e-14
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    31   0.91 
Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z70682-8|CAA94583.2|  385|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  174 bits (423), Expect = 7e-44
 Identities = 85/149 (57%), Positives = 103/149 (69%), Gaps = 2/149 (1%)
 Frame = +3

Query: 252 EFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIM 428
           +FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +M
Sbjct: 68  KFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVM 127

Query: 429 FGPDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL*L*NLTTPMKSSLTMRK 605
           FGPDICGP T++VHVI +YKG+N LIKK I+      TH+ TL L N     +  +    
Sbjct: 128 FGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLIL-NSDNTYEVKIDGES 185

Query: 606 LNLGDLEADWDFLPPKKIKDPEAKKPEDW 692
              G LE DWD LP KKIKDP+AKKPEDW
Sbjct: 186 AQTGSLEEDWDLLPAKKIKDPDAKKPEDW 214



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/56 (50%), Positives = 41/56 (73%)
 Frame = +1

Query: 85  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 252
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDA 67



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DW+   P+ I DP+AKKPEDW
Sbjct: 230 DWE--KPEHIPDPDAKKPEDW 248


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  174 bits (423), Expect = 7e-44
 Identities = 85/149 (57%), Positives = 103/149 (69%), Gaps = 2/149 (1%)
 Frame = +3

Query: 252 EFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIM 428
           +FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +M
Sbjct: 68  KFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVM 127

Query: 429 FGPDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL*L*NLTTPMKSSLTMRK 605
           FGPDICGP T++VHVI +YKG+N LIKK I+      TH+ TL L N     +  +    
Sbjct: 128 FGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLIL-NSDNTYEVKIDGES 185

Query: 606 LNLGDLEADWDFLPPKKIKDPEAKKPEDW 692
              G LE DWD LP KKIKDP+AKKPEDW
Sbjct: 186 AQTGSLEEDWDLLPAKKIKDPDAKKPEDW 214



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/56 (50%), Positives = 41/56 (73%)
 Frame = +1

Query: 85  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 252
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDA 67



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DW+   P+ I DP+AKKPEDW
Sbjct: 230 DWE--KPEHIPDPDAKKPEDW 248


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 16/165 (9%)
 Frame = +3

Query: 246 RCEFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETP 416
           +   +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + +  +   +T 
Sbjct: 117 KARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTA 176

Query: 417 YEIMFGPDICGPGTKKVHVIFSYKGK-NHLIKKISAAKMM----------STHICTL*L* 563
           Y IMFGPD CG  T KVH+IF YK   N  I +  A +            +TH+ TL + 
Sbjct: 177 YTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTL-VV 234

Query: 564 NLTTPMKSSLTMRKLNLGDLEADWD--FLPPKKIKDPEAKKPEDW 692
             T     S+  + L  G++ +D      PPK+I D    KP DW
Sbjct: 235 KPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDW 279



 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DW+    + I DPEAKKP+DW
Sbjct: 314 DWNEEENELIADPEAKKPQDW 334



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
           DWD   P+ + D  A KP DW
Sbjct: 295 DWDENEPQSVVDEAATKPYDW 315


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 287 ERFELTGESIELASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQ 141
           E   +T  S++L +  V   +S    L  +  ++ +F  SFP C LYT+
Sbjct: 349 ENDSITEMSVQLTTYGVNPAISMDRRLSRYSRISCSFHFSFPSCLLYTK 397


>Z75714-2|CAB00059.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC434.3 protein.
          Length = 474

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 585 SSLTMRKLNLGDLEADWDFLPPKKIKDPEAKK 680
           S    RK++  D++ DW + P  + + PE KK
Sbjct: 423 SPFDFRKIDSDDVKPDWPYAPGSRRRAPEKKK 454


>Z70682-8|CAA94583.2|  385|Caenorhabditis elegans Hypothetical
           protein F08G5.1 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 148 YSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLS 327
           YS + G+      LTA +FFS P  +   + +  AS++ S + S  SV+  +   S    
Sbjct: 166 YSTNIGESSRMPALTANEFFSQPVYNPYNRPASSASTVSSSIGSAYSVLHDDSPFSGFSP 225

Query: 328 NMNKTL 345
           N N +L
Sbjct: 226 NSNHSL 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,898,204
Number of Sequences: 27780
Number of extensions: 435737
Number of successful extensions: 1398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)