Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0178
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 165 4e-41
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 161 5e-40
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 142 2e-34
At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin... 73 2e-13
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi... 73 2e-13
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 68 8e-12
At5g56820.1 68418.m07090 F-box family protein contains F-box dom... 33 0.16
At5g55810.1 68418.m06955 nicotinamide-nucleotide adenylyltransfe... 32 0.36
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont... 31 0.84
At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR... 30 1.5
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 30 1.5
At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705... 30 1.9
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina... 29 3.4
At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5)... 29 4.5
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 28 5.9
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 28 7.9
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 28 7.9
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 165 bits (400), Expect = 4e-41
Identities = 87/180 (48%), Positives = 106/180 (58%), Gaps = 1/180 (0%)
Frame = +3
Query: 174 WKV*IDCWKVLQRPRG*QRFENL*RCEFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCG 353
WK W +G Q E+ FYA+S +F FSN+ K LV QF+VKHEQ +DCG
Sbjct: 53 WKHTAGNWSGDANDKGIQTSEDY---RFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCG 109
Query: 354 GGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKM 530
GGY+K+ ++QK G+TPY IMFGPDICG TKKVH I +Y NHLIKK +
Sbjct: 110 GGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNEANHLIKKDVPCETD 169
Query: 531 MSTHICTL*L*NLTTPMKSSLTMRKLNLGDLEADWDFLPPKKIKDPEAKKPEDWG*QAHL 710
TH+ T L T + K G L +DWD LPPKKIKDP AKKPEDW Q ++
Sbjct: 170 QLTHVYTFILRPDATYSILIDNVEK-QTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQEYI 228
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 97 VFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDDKGLKTSED 249
V FEE+F DD WE+ WV SE G++K TAG + D +DKG++TSED
Sbjct: 24 VIFEERF-DDGWENRWVKSEWKKDDNTAGEWKHTAGNWSGD-ANDKGIQTSED 74
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 648 PKKIKDPEAKKPEDW 692
PK+I D ++KKPEDW
Sbjct: 243 PKEIPDTDSKKPEDW 257
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 161 bits (391), Expect = 5e-40
Identities = 85/174 (48%), Positives = 102/174 (58%), Gaps = 1/174 (0%)
Frame = +3
Query: 174 WKV*IDCWKVLQRPRG*QRFENL*RCEFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCG 353
WK W +G Q E+ FYA+S +F FSN+ K LV QF+VKHEQ +DCG
Sbjct: 53 WKHTAGNWSGDANDKGIQTSEDY---RFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCG 109
Query: 354 GGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKM 530
GGY+K+ ++Q G+TPY IMFGPDICG TKKVH I +Y G NHLIKK +
Sbjct: 110 GGYMKLLSDDVDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETD 169
Query: 531 MSTHICTL*L*NLTTPMKSSLTMRKLNLGDLEADWDFLPPKKIKDPEAKKPEDW 692
TH+ T L T + K G L +DWD LP KKIKDP AKKPEDW
Sbjct: 170 QLTHVYTFVLRPDATYSILIDNVEK-QTGSLYSDWDLLPAKKIKDPSAKKPEDW 222
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +1
Query: 85 INCDVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDDKGLKTSED 249
++ +V FEEKF +D WE WV S+ G++K TAG + D +DKG++TSED
Sbjct: 20 VSAEVIFEEKF-EDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGD-ANDKGIQTSED 74
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 648 PKKIKDPEAKKPEDW 692
PK+I D +AKKPEDW
Sbjct: 243 PKEIPDTDAKKPEDW 257
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 142 bits (344), Expect = 2e-34
Identities = 69/146 (47%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Frame = +3
Query: 258 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 437
YA+S K FSN+ + LVVQ++VK EQDI+CGG Y+K+ + QK G+TPY +MFGP
Sbjct: 84 YAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGP 143
Query: 438 DICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL*L*NLTTPMKSSLTMRKLNL 614
DICG TKK+HVI SY+G+N+ IKK + H T L + ++
Sbjct: 144 DICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFIL-RPDASYSVLVDNKEREF 202
Query: 615 GDLEADWDFLPPKKIKDPEAKKPEDW 692
G + DWD LPP+KIK AKKPEDW
Sbjct: 203 GSMYTDWDILPPRKIKVKNAKKPEDW 228
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 94 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDA 252
++F EE F + W+S WV S+ E G FK TAGK+ DP D+KG++T DA
Sbjct: 29 EIFLEEHF-EGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDP-DNKGIQTYNDA 81
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 648 PKKIKDPEAKKPEDWG*QAH-LFQTPK 725
P++I D +AK+PEDW + + L++ PK
Sbjct: 249 PREIPDRKAKEPEDWDEEENGLWEPPK 275
>At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin
homolog 1, Arabidopsis thaliana, EMBL:AT08315
[SP|P29402]
Length = 530
Score = 73.3 bits (172), Expect = 2e-13
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Frame = +3
Query: 279 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICG 449
+P + + +V+Q+ V+ ++ ++CGG YLK + + E+PY IMFGPD CG
Sbjct: 85 EPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCG 144
Query: 450 PGTKKVHVIFSYKG-------KNHLIKKISAAKMMSTHICTL*L*--NLTTPMKSSLTMR 602
GT KVH I +K ++HL S +H+ T L N + +
Sbjct: 145 -GTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKK 203
Query: 603 KLNLGDLEADWD--FLPPKKIKDPEAKKPEDWG*QAHL 710
K NL E D++ +P K I DPE KKPEDW +A +
Sbjct: 204 KANLLSGE-DFEPALIPAKTIPDPEDKKPEDWDERAKI 240
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 530 DVYTHLYTLIVKPDNTYEVLIDNEK 604
D +H+YT I+KPDN +L+D E+
Sbjct: 177 DKLSHVYTAILKPDNEVRILVDGEE 201
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
DWD P +I+D EA+KPE W
Sbjct: 250 DWDEDAPMEIEDEEAEKPEGW 270
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 648 PKKIKDPEAKKPEDWG*QAH-LFQTPK 725
P+++ DPEA KPEDW + +++ PK
Sbjct: 275 PEEVDDPEATKPEDWDDEEDGMWEAPK 301
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
DWD KI DP A KPEDW
Sbjct: 233 DWD--ERAKIPDPNAVKPEDW 251
>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
similarity to calnexin homolog 1, Arabidopsis thaliana,
EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
calreticulin family
Length = 532
Score = 72.9 bits (171), Expect = 2e-13
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Frame = +3
Query: 291 NEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTK 461
NEG +V+Q+ + ++ ++CGG YLK + + ++PY IMFGPD CG T
Sbjct: 92 NEGT-VVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQGFDNDSPYSIMFGPDKCG-ATN 149
Query: 462 KVHVIFSYKG-------KNHLIKKISAAKMMSTHICTL*L*NLTTPMKSSLTMRKLNLGD 620
KVH I +K ++HL S M +H+ T L ++ + + G+
Sbjct: 150 KVHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVL-KSDNEVRILVDGEEKKKGN 208
Query: 621 LEADWDFLPP----KKIKDPEAKKPEDWG*QAHL 710
L + DF PP K I DPE KKPEDW +A +
Sbjct: 209 LLSAEDFEPPLIPSKTIPDPEDKKPEDWDERAKI 242
Score = 33.1 bits (72), Expect = 0.21
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 530 DVYTHLYTLIVKPDNTYEVLIDNEKVESG 616
D+ +H+YT ++K DN +L+D E+ + G
Sbjct: 179 DMLSHVYTAVLKSDNEVRILVDGEEKKKG 207
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 630 DWDFLPPKKIKDPEAKKPEDW 692
DWD P +I+D EA+KPE W
Sbjct: 252 DWDEDAPMEIEDEEAEKPEGW 272
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 648 PKKIKDPEAKKPEDW 692
P +++DPEA KPEDW
Sbjct: 277 PVEVEDPEASKPEDW 291
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 67.7 bits (158), Expect = 8e-12
Identities = 28/57 (49%), Positives = 40/57 (70%)
Frame = +3
Query: 258 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIM 428
YA+S K FSN+ + LVVQ++VK EQDI+CGG Y+K+ + QK G+TPY ++
Sbjct: 84 YAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSVL 140
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +3
Query: 573 TPMKSSLTMRKLNLGDLEADWDFLPPKKIKDPEAKKPEDW 692
TP + ++ G + DWD LPP+KIK AKKPEDW
Sbjct: 135 TPYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDW 174
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 94 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDA 252
++F EE F + W+S WV S+ E G FK TAGK+ DP D+KG++T DA
Sbjct: 29 EIFLEEHF-EGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDP-DNKGIQTYNDA 81
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 648 PKKIKDPEAKKPEDWG*QAH-LFQTPK 725
P++I D +AK+PEDW + + L++ PK
Sbjct: 195 PREIPDRKAKEPEDWDEEENGLWEPPK 221
>At5g56820.1 68418.m07090 F-box family protein contains F-box domain
Pfam:PF00646
Length = 435
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = -3
Query: 212 SLKNFPAVNLNFPNSFPGC-SLYTQLLSHES-SGNFSSKNTSQFIEDNASKLTTTSTTAF 39
S+K+ P +++ PNS P C + + + L + +G K + +I NA +L T + + +
Sbjct: 332 SIKDQPNISVRKPNSVPECLTFHLETLEWQGYAGRPEDKEIAVYILGNALRLNTATISRY 391
Query: 38 IFDSQYHLLQQK 3
S++ Q+K
Sbjct: 392 FSSSRFRHHQKK 403
>At5g55810.1 68418.m06955 nicotinamide-nucleotide
adenylyltransferase, putative / NAD(+)
pyrophosphorylase, putative similar to nicotinamide
mononucleotide adenylyl transferase [Homo sapiens]
GI:11245478; contains Pfam profile PF01467:
Cytidylyltransferase
Length = 238
Score = 32.3 bits (70), Expect = 0.36
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 208 SDPEDDKGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTSRSLTANW 387
+D KGL ++E M + + + V+PW +S SN +TLTV + LT N
Sbjct: 64 NDAYKKKGLLSAEHRLEMCNVSCQSSDFVMVDPW-EASQSNYQRTLTVLSRVKTFLTTN- 121
Query: 388 SRRTCTERLH-MRLCSA 435
R E L M LC +
Sbjct: 122 -RHVPEESLKVMLLCGS 137
>At1g74170.1 68414.m08590 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1068
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 312 VQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEI 425
++F KH D GG +F L + ++ GE P E+
Sbjct: 830 IEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEL 867
>At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1008
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +1
Query: 232 LKTSEDASSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTSRSLTANWSRRTCTER 411
LK+ D SS +S + NR+ + PW S + + E + ++ N S+ E
Sbjct: 717 LKSFPDISSNISELYLNRTAIEEVPWWIQKFSRLKRLRMRECKKLKCISPNISKLKHLEM 776
Query: 412 LHMRLCSALT 441
L C A T
Sbjct: 777 LDFSNCIATT 786
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 312 VQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYE 422
++F KH D GG +F L + ++ GE P E
Sbjct: 762 IEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVE 798
>At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705:
Eukaryotic protein of unknown function (DUF829)
Length = 420
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 400 MSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNL 272
+ F S L K +P + MS V+W KG+ S L+GL L
Sbjct: 147 LDFTSDLNVKFALHPTIRRMSGPSRLVSWVAKGISSGLDGLYL 189
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +1
Query: 166 KEFGKFKLTAGKFFSDPEDDKGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLSNMNKTL 345
K+ K T K+FS+ +++ TSE A+ M V +NR +R+ SS+ NK
Sbjct: 108 KKVNKASETFDKYFSNGGENRSGSTSELATWMEKNVEANRHSVRLRTKRPSSILE-NKEN 166
Query: 346 TVEADTSR 369
+ A++SR
Sbjct: 167 SGVAESSR 174
>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 769
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 140 LLSHESSGNFSSKNTSQFIEDNASKLTTTS 51
LLSH S+ N TS+ + + S+LTTTS
Sbjct: 218 LLSHNSTINIDDLRTSKAVSRSLSELTTTS 247
>At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5) /
gibberellin-responsive protein 5 identical to GASA5
[Arabidopsis thaliana] GI:1289320
Length = 97
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = -1
Query: 406 PCMSFCSSLQSKTLRYPP---PQSMSCSCLTVNWTTK 305
PCM FC K L PP +C C NW TK
Sbjct: 55 PCMFFCLKCCKKCLCVPPGTFGNKQTCPCYN-NWKTK 90
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 712 NKWACHPQSSGFLASGSLIFLGGRKSQSASRSPRFNFLI 596
N+W H S +L+ SL+FL AS SP FN LI
Sbjct: 294 NRWLIHFPSIKYLSVFSLLFLAILTLPWASISPIFNNLI 332
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 545 NVCRHHLCSGYLFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIWS 411
NV HH+ + + +++L ED+V + R N + E WS
Sbjct: 980 NVLVHHVIMMFYYGNPLVSLSFEDFVTRIALRCLNTQMEMLKFWS 1024
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 545 NVCRHHLCSGYLFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIWS 411
NV HH+ + + +++L ED+V + R N + E WS
Sbjct: 980 NVLVHHVIMMFYYGNPLVSLSFEDFVTRIALRCLNTQMEMLKFWS 1024
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,863,302
Number of Sequences: 28952
Number of extensions: 404472
Number of successful extensions: 1202
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -