Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0177
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.1  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.8  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   8.7  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 196 QEHDGLQHHRCTRSIVHHP*XCSRTHKRNANFKVH 92
           +EH+G +HHR      HH     + H +    K H
Sbjct: 348 EEHEGPEHHRGPEDKEHHKGPKDKEHHKGPKDKEH 382


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 643 SGFMTAPLGYTIFYAKFLPGWPTXLDXGPFSIG 741
           SG++T+PL + I  ++  PG PT  D  P  IG
Sbjct: 173 SGYITSPLRHPILLSETEPGTPTKND-SPAYIG 204


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 301 YPWTEHRPDNYFPASVESMAIRYPTFTRRNREIPVXLHADNTDRIQN 441
           YP T H   +Y+P   + +   +PT    +  +   +H +  D + N
Sbjct: 179 YPTTWHFASHYYPTDSKQLVKYHPTEVHPSWTVEEPVHYNTYDGVVN 225


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 480  RYEVKRSIGIKIGILY---SVRIIGMKXHWYF 394
            RY V  S+GI IG+++   S  I+    HW+F
Sbjct: 1104 RYVVIISLGISIGVMFLIMSGSIVVEIIHWFF 1135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,274
Number of Sequences: 5004
Number of extensions: 58481
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)