Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0177
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142...    31   0.74 
01_05_0056 + 17693332-17693603,17694298-17694520,17695420-176956...    28   6.9  
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83...    28   9.1  
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159...    28   9.1  

>10_06_0114 -
           10911713-10911724,10913642-10913772,10913869-10914229,
           10914339-10915081,10918916-10918964,10919063-10919334,
           10919426-10919519,10919618-10920000,10920504-10920575,
           10920656-10920778,10920875-10921048,10921115-10921579,
           10921662-10921839
          Length = 1018

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 670 IQVGRS*TPXQSXYXXPXCPIRRLGTPTPSQL*SLWL 560
           I++  + TP Q  Y  P    RR   PT SQ+ ++WL
Sbjct: 403 IELNTNVTPDQRRYNAPTASQRRYNAPTASQVAAIWL 439


>01_05_0056 +
           17693332-17693603,17694298-17694520,17695420-17695668,
           17695771-17695824
          Length = 265

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = -3

Query: 237 AGKLVTSVEFXFFIKSMMVCSITVALVRLYIIPXXVLVHTKGTRISK---CTCKCHNVCT 67
           AG L+  + F F     + CS  VAL +L +IP        G+ I      T +    C+
Sbjct: 185 AGGLIIGLTFVFVGLLTVECSFDVALRQLLVIPISATAGLLGSLIDSVLGATLQFSGYCS 244

Query: 66  FRGTXNSVI*SEIDP 22
            R     +I    DP
Sbjct: 245 VRKKVLPLIAQRFDP 259


>03_01_0104 -
           830884-831282,831511-832205,832368-833387,833570-833696,
           834342-834709,834780-835059,835137-835466
          Length = 1072

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 573 DHCG*FVTVNVXEGICXDFQSILVTSFQEAVRYEVKRSIGIKIGILYSVRI--IGMKXHW 400
           DH G  +  +    +C D  S + + F+E   + + +S  I  G+L   R+  +G+    
Sbjct: 777 DHLGVLIEDDAGRNVCIDDLSSITSPFKENDSFRLVKSALIVTGVLNHERLSKLGLNIRT 836

Query: 399 YFXVP 385
           +  VP
Sbjct: 837 WANVP 841


>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
            25416016-25416081,25416170-25416240,25416375-25416450,
            25416567-25420098,25421464-25421834
          Length = 1524

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 418  DNTDRIQNANLDANGPFYFISHGFLEGXHKNGLKIXANALXDIDGNESATVIIVDWAWGF 597
            DN+++ Q   + ++        G ++G   N      NA+ D +GN+S T +I+D    F
Sbjct: 949  DNSEKSQVEEIFSHEEGQLSVEGGIDGG-PNDAYAGVNAINDGNGNDSETKVIIDDGTDF 1007

Query: 598  PTSV 609
             T +
Sbjct: 1008 NTKM 1011


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,142,722
Number of Sequences: 37544
Number of extensions: 413540
Number of successful extensions: 851
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)