Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0177
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      38   0.007
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.081
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)                     30   1.7  
SB_50217| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
 Frame = +1

Query: 268 CXDIYGCFSKAYPWTEHRPDNYFPASVESMAIRYPTFTRRNREIPVXLHA--DNTDRIQN 441
           C D+YGCFS  +P+       Y P   ES A  +  F    RE PV      ++ D  ++
Sbjct: 44  CYDVYGCFSNDHPFNR----KYVPLP-ESPASIHTQFMLYTRESPVQYQQLYEDMDITRD 98

Query: 442 ANLDANGPFYFISHGFLEGXHKNGLKIXANALXDIDGNE-----SATVIIVDW---AWGF 597
            + +A+     I HGF        ++   N       NE        VIIVDW   AW F
Sbjct: 99  THFNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPMKNELLWEGDFNVIIVDWMRGAW-F 157

Query: 598 PTSVWDXAVANXXIGSGFMTAPL 666
           P   +  AVAN  +  G  TA L
Sbjct: 158 P---FTRAVANTRL-VGAQTARL 176


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +1

Query: 268 CXDIYGCFSKAYPWTEHRPDNYFPASVESMAIRYPTFTRRNREIPVXLHADNTDRIQNAN 447
           C   YGCF    P+  +RP    P   + +   +  FTR N  I   +   +  ++Q + 
Sbjct: 457 CYPKYGCFHDNPPF--NRPLVPLPHPPDRVGTNFRLFTRSNPLISNVIDDSDVSKLQASR 514

Query: 448 LDANGPFYFISHGFLE 495
            D       I HGF+E
Sbjct: 515 YDGKKRTIIIVHGFIE 530


>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 759

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -2

Query: 253 IITKSCREISDIRRILXLHQEHDGLQHHRCTRSIVHHP 140
           I  +  ++++  +R+L LH  ++G++H+   R I HHP
Sbjct: 255 INAEDAKQVTSHQRVLKLHHGNEGIRHN---RDIKHHP 289


>SB_50217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +1

Query: 283 GCFSKAYPWTEHRPDNYFPASVESMAIRYPTFTRRNREIPVXLHADNTDRIQNA-NLDAN 459
           GC     PW  H  D+ F     ++ +++   T  +  +   +H D +  +Q A   D +
Sbjct: 116 GCSDDELPWNRHADDDAFNTETSAL-LQFAMHTDTSALLQFAMHTDTSALLQFAMQTDTS 174

Query: 460 GPFYFISH 483
               F  H
Sbjct: 175 ALLQFAMH 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,366,988
Number of Sequences: 59808
Number of extensions: 480197
Number of successful extensions: 962
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)