Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0177
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 29 3.5
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 29 4.6
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 29 4.6
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 29 4.6
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 29 4.6
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 29 4.6
U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome regu... 28 8.1
U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regu... 28 8.1
AF106575-12|AAC78165.1| 374|Caenorhabditis elegans Hypothetical... 28 8.1
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 117 KGTRISKCTCKCHNVCTFRGTXNSV 43
K +ISK T +C + C FRG N+V
Sbjct: 613 KKEKISKVTAQCLDNCNFRGVCNNV 637
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 117 KGTRISKCTCKCHNVCTFRGTXNSV 43
K +ISK T +C + C FRG N+V
Sbjct: 613 KKEKISKVTAQCLDNCNFRGVCNNV 637
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 231 KLVTSVEFXFFIKSMMVCSITVALVRLYIIP 139
+LVTS F +FI +M+ C+ + +++ Y P
Sbjct: 1056 RLVTSPPFEYFIMTMICCNTLILMMKYYNNP 1086
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 231 KLVTSVEFXFFIKSMMVCSITVALVRLYIIP 139
+LVTS F +FI +M+ C+ + +++ Y P
Sbjct: 1056 RLVTSPPFEYFIMTMICCNTLILMMKYYNNP 1086
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 231 KLVTSVEFXFFIKSMMVCSITVALVRLYIIP 139
+LVTS F +FI +M+ C+ + +++ Y P
Sbjct: 1175 RLVTSPPFEYFIMTMICCNTLILMMKYYNNP 1205
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 231 KLVTSVEFXFFIKSMMVCSITVALVRLYIIP 139
+LVTS F +FI +M+ C+ + +++ Y P
Sbjct: 662 RLVTSPPFEYFIMTMICCNTLILMMKYYNNP 692
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 231 KLVTSVEFXFFIKSMMVCSITVALVRLYIIP 139
+LVTS F +FI +M+ C+ + +++ Y P
Sbjct: 1175 RLVTSPPFEYFIMTMICCNTLILMMKYYNNP 1205
>U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform a
protein.
Length = 668
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 331 YFPASVESMAIRYPTFTRRNREIPVXLHADNTDRIQNANLDANGPFYFISHGF 489
Y +E+ Y T +++ IP L D DRI NLD ++ IS GF
Sbjct: 119 YVNKIIETAIDTYKTLSKQGSGIPQKLR-DLIDRIVARNLDKREIWFVISLGF 170
>U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform b
protein.
Length = 965
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 331 YFPASVESMAIRYPTFTRRNREIPVXLHADNTDRIQNANLDANGPFYFISHGF 489
Y +E+ Y T +++ IP L D DRI NLD ++ IS GF
Sbjct: 119 YVNKIIETAIDTYKTLSKQGSGIPQKLR-DLIDRIVARNLDKREIWFVISLGF 170
>AF106575-12|AAC78165.1| 374|Caenorhabditis elegans Hypothetical
protein K04F1.6 protein.
Length = 374
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +2
Query: 335 SLHLSSQWQYGIQLLLAGTXKYQXXFMPIIRTEYKMPILMPMDRFTSYRTASWKXVTRMD 514
SL+ SS W+YGI L+ + + + I+MP + RT W + ++
Sbjct: 287 SLNFSSNWEYGINLI------HGFPLLSVTHNSVLETIVMPRLKGIQLRTPFWIELHNVN 340
Query: 515 *KSXQMPS 538
K +P+
Sbjct: 341 EKLKSLPN 348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,984,808
Number of Sequences: 27780
Number of extensions: 355455
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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