Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0176
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   3.9  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.1  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   6.8  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.0  

>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/91 (19%), Positives = 38/91 (41%)
 Frame = -1

Query: 692 VKILFIHITFYQTSRTYHSALCLLFESALNYLFICT*IQKIKRYYIHQIIF*YTSFCSRG 513
           V +L + I F+  +  Y +    +    + +  I +    + R Y+ + +     F   G
Sbjct: 159 VLLLLLSICFFVGAAFYTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQYFIPYG 218

Query: 512 VLRSSRHATMYTHTRPILVNISHCDTARRSI 420
            L ++  AT+      ++  I+HC    RS+
Sbjct: 219 TLCANVFATLLLSIMYMIPQITHCTPVSRSV 249


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/91 (19%), Positives = 38/91 (41%)
 Frame = -1

Query: 692 VKILFIHITFYQTSRTYHSALCLLFESALNYLFICT*IQKIKRYYIHQIIF*YTSFCSRG 513
           V +L + I F+  +  Y +    +    + +  I +    + R Y+ + +     F   G
Sbjct: 159 VLLLLLSICFFVGAAFYTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQYFIPYG 218

Query: 512 VLRSSRHATMYTHTRPILVNISHCDTARRSI 420
            L ++  AT+      ++  I+HC    RS+
Sbjct: 219 TLCANVFATLLLSIMYMIPQITHCTPVSRSV 249


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 519 ARRSSVVPTRDNVHTHTSHSSEHLALRHSKALYL 418
           ++  S V T D  HT T HSS+H  L+  K+ +L
Sbjct: 32  SKNGSYVETDDVKHTDTHHSSKH-ELKKLKSHFL 64


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 518 RGVLRSSRHATMYTHTRPILVNISHCDTARRSICIYPRLAR 396
           R  ++ +   T+Y   R +LV ++H D     I +  +LAR
Sbjct: 443 REFVKETDTITLYKSMREVLVYLTHLDVVDTEIVMTEKLAR 483


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 728  SRLGPIQFLYXSVKILFIHITFYQTSRTYH 639
            S LG  QFL+  + I+     F   SR YH
Sbjct: 1093 SNLGDFQFLFIDLVIILPIAVFMGRSRPYH 1122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,087
Number of Sequences: 5004
Number of extensions: 62158
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)