Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0176
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492     29   3.1  
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210...    28   9.4  
06_02_0193 - 12874300-12874863                                         28   9.4  

>03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492
          Length = 509

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 443 CDTARRSICIYPRLARTYFE*SV 375
           CDTARR+    PR+   YFE S+
Sbjct: 271 CDTARRTFAELPRILPVYFEYSI 293


>09_04_0371 -
           17020539-17020607,17020697-17020747,17020888-17021058,
           17023296-17023404,17023570-17023676,17024429-17024640,
           17024805-17024952
          Length = 288

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 540 LIYKFLFARRSSVVPTR-DNVHTHTSH 463
           L+  F+FA  S++ PTR D+V  H SH
Sbjct: 27  LVIVFVFAFSSAITPTRADHVEGHMSH 53


>06_02_0193 - 12874300-12874863
          Length = 187

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 405 SRVYTDRAPCCVAVRDVH*NGTCVCVHCRVSGRPKNASRTETCILKYN 548
           S V  D    CV   +VH N   +  HCR   R     +     +KYN
Sbjct: 35  SSVLVDPVYICVECSEVHRNQQTMAAHCRSHIRSDGMEKGTVRHIKYN 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,422,511
Number of Sequences: 37544
Number of extensions: 356847
Number of successful extensions: 852
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)