Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0176
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14)                 29   5.4  
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               28   9.5  
SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 532 QVSVREAFFGRPDTRQCTHTHVPF**TSRTATQQGALSVYTR-D*PVHISSDRY 374
           +   RE  +  PDTR   H H P   ++RT T Q  +S YT  D  +H+ + R+
Sbjct: 206 RTQTREYTYTHPDTR--IHVHTPRHASTRTCT-QARMSTYTHPDTQMHVHAPRH 256


>SB_54912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 644 YHSALCLLFESALNYLFICT-*IQKIKRYY-IHQIIF*YTSFCSRGVLRSSRHATMYTHT 471
           Y ++L  LF    NYLF+C    Q++ +YY  H I     S C+  +L S R++  +  T
Sbjct: 25  YSNSLQYLFVGEYNYLFVCEYEKQRVPQYYPTHPIPHYPNSLCT-CLLASMRYSAFHMTT 83

Query: 470 RPILVNISH 444
           +  L    H
Sbjct: 84  QLTLSPYYH 92


>SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
 Frame = +2

Query: 242 NSSIRSLPIYYVINLAQVSEFIF-TYNIGVIVLDVM-FGTL*GSLQVPITRNMYGL-IAG 412
           N  +R   +Y+VINLA +++F+F      V+ +++M F  L  +L + ITR    + +A 
Sbjct: 43  NRHLRKKSVYFVINLA-ITDFLFGAAYAPVVCIELMDFNPLQPNL-LRITREKINIFLAL 100

Query: 413 IYR*S-ALLCRSARCSLEW 466
           I+  S AL+ +   C++ W
Sbjct: 101 IHFVSLALISQDRMCAIVW 119


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 334 VRCNVRYSIGESSGTDHSKYVRANRGYIQIERL 432
           V   + Y++ +S GTD  K V AN GY  I  L
Sbjct: 640 VETPIGYTLFKSKGTDKEKKVEANIGYTWIPML 672


>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 34/103 (33%), Positives = 41/103 (39%)
 Frame = +3

Query: 180 VNVPRVPMCLPCVCVVSINCKIVQLEVCRYIM*LT*HKLVNSYLRIILVLSC*M*CSVLY 359
           V+V RV +  PC   V   C  V +   R  +         S L +  V  C M  SVLY
Sbjct: 164 VSVLRVRVVCPCWVYVCTGCVAVAVLCFRVCL---------SLLCVRFVCPCCM--SVLY 212

Query: 360 RGVFRYRSLEICTG*SRVYTDRAPCCVAVRDVH*NGTCVCVHC 488
             V    +   C    RV     PCCV+V  V    TCV V C
Sbjct: 213 VRV----ACPCCMSVLRVRV-ACPCCVSVLGVRVECTCVRVVC 250


>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 651 SYVSFRPLPTL*ERVKLFIYMYLNTKNKTLLYTSNYILIYKFLFARRS 508
           +Y S RP   L  RV +++Y+Y+       +Y   Y+ +Y +++   S
Sbjct: 253 AYASRRPFSML--RVYVYVYVYVYVYVYVYVYVYVYVYVYVYVYGSAS 298


>SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 226 TTHTHGKHIGTRGTFTNRTKISLILNTYV 140
           T   HG H GTRG F N    S +   +V
Sbjct: 28  TIREHGDHSGTRGPFWNSGHFSQVRGNFV 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,413,460
Number of Sequences: 59808
Number of extensions: 468651
Number of successful extensions: 1827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)