Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0176
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    31   0.90 
AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine re...    29   4.8  
U41105-10|AAA82404.1|  238|Caenorhabditis elegans Hypothetical p...    28   8.4  

>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 756 IIVPLNKMTESARXYTIFIPEC*NFIHSYYILSN*SYVSFRPLPTL 619
           I V L  +  SA  +TIF  +C  ++   + L+   Y +F PLPT+
Sbjct: 260 IPVLLMHIPASAIYFTIFFDKCTEYLGKIFTLTVAMYPTFNPLPTI 305


>AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 66 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 715 LYNFYTXVLKFYSFILHFIKLVVRIIPPFAYSLRAR 608
           +YNF T +LK   F+L+     + I  P A++++AR
Sbjct: 30  IYNFTTPILKPMRFLLYPANAAMTISIPSAFAMQAR 65


>U41105-10|AAA82404.1|  238|Caenorhabditis elegans Hypothetical
           protein T02G5.3 protein.
          Length = 238

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 44  RGRTRIQYTSTVHIFVASLLFVMNVFIL**TFYIS 148
           R R+ I+Y + + +++   +F +N F++   F+IS
Sbjct: 186 RARSEIKYQNRLRLYLGFCVFALNFFVIDQIFFIS 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,178
Number of Sequences: 27780
Number of extensions: 349832
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)