Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0176
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 606 KLFIYMYLNTKNKTLLYTSNYILIYKFLFARR--SSVVPTRDNVH 478
           K +IY   +   KTL +  + +L +++L AR   S++ P  + ++
Sbjct: 44  KAYIYTIKSNMAKTLQFDVHMMLQFRYLDARLKFSNIAPYLNQIY 88


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 597 IYMYLNTKNKTLLYTSNYIL 538
           I  Y+  + KTL YT N IL
Sbjct: 223 ITFYIIIRRKTLFYTVNLIL 242


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 519 ARRSSVVPTRDNVHTHTSHSSEHLALRHSKALYLYIPAISPY-IFRVIG 376
           A++ +V   R N +T +  +   +A       +LY+ + +PY +  +IG
Sbjct: 249 AKKMNVDSLRSNANTSSQSAEIRIAKAAITICFLYVLSWTPYGVMSMIG 297


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 731 LSRLGPIQFLYXSVKIL 681
           LS LGPI+ L  S+K+L
Sbjct: 98  LSFLGPIKSLSLSIKML 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 458 LEWDVCVCTLSRVGTTEERLANRN 529
           L W  C+  +SR    EER A ++
Sbjct: 337 LYWLPCILRMSRPSDKEEREAQKS 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,598
Number of Sequences: 438
Number of extensions: 4338
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)