Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0176
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42100.1 68416.m04322 AT hook motif-containing protein-relate...    29   3.4  
At5g12235.1 68418.m01436 CLE22, putative CLAVATA3/ESR-Related 22...    28   5.9  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   5.9  
At1g04210.1 68414.m00411 leucine-rich repeat family protein / pr...    28   7.8  

>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
            very low similarity to SP|Q9UUA2 DNA repair and
            recombination protein pif1, mitochondrial precursor
            {Schizosaccharomyces pombe}; weak hit to Pfam profile
            PF02178: AT hook motif
          Length = 1752

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 522  FARRSSVVPTRDNVHTHTSHSSEHLALRHSKALYLYIPAISP 397
            F RR+ + PT ++V+T   +  EH  L+  + +YL   +I P
Sbjct: 1535 FQRRAILAPTNEDVNTINQYMLEH--LKSEERIYLSADSIDP 1574


>At5g12235.1 68418.m01436 CLE22, putative CLAVATA3/ESR-Related 22
           (CLE22)
          Length = 103

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 543 ILIYKFLFARRSSVVPTRDNVHTHTSHSS 457
           +L++ FL+A+ SS  P   N+H H++H S
Sbjct: 24  LLLFLFLYAKASSSSP---NIHHHSTHGS 49


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/108 (24%), Positives = 46/108 (42%)
 Frame = -3

Query: 651  SYVSFRPLPTL*ERVKLFIYMYLNTKNKTLLYTSNYILIYKFLFARRSSVVPTRDNVHTH 472
            S + FR +PT    +     +YLN  NK    T +     K+L+A       + ++V+  
Sbjct: 947  SSLEFRRIPTSIRELSFMRTLYLNNCNKIFSLT-DLPESLKYLYAHGCE---SLEHVNFS 1002

Query: 471  TSHSSEHLALRHSKALYLYIPAISPYIFRVIGT*RLPYRVPNITSNTI 328
            ++HS  HL   H  +L      +  ++         P+R+  IT  +I
Sbjct: 1003 SNHSFNHLDFSHCISLECISDLVRDFMNEEYSQ-EAPFRLVCITKYSI 1049


>At1g04210.1 68414.m00411 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1112

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 385 SDRYLKTPL*STEHYI*HDNTNIIRKYEFTNLC 287
           S++YL  P  S  H +  D TN+ RKY   + C
Sbjct: 481 SEKYLDNPKGSKCHKLSTDITNLSRKYSSNSFC 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,998,011
Number of Sequences: 28952
Number of extensions: 298430
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)