Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0175
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   1.9  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   5.7  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   10.0 

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 348 VGLVTRETDLNRVHGGMDKDSWCLNSDGTVRSDNVELYHLAPAPRESPTDELL 506
           +G V  ET+LNR++ G+  ++     +G    + ++  H A + R   T   L
Sbjct: 1   MGTVVGETELNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTSSQL 53


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 629 ELNFFLNGKNMEIPVRNIQGTGIFQLCTL 715
           ELNF L+     I V  + GTG F L  L
Sbjct: 361 ELNFHLDTSGFPITVEGVNGTGRFILFNL 389


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 276 LGNTPLLQNK--AYFEVKLQQGGVW 344
           +G  P ++NK  AY  ++L + GVW
Sbjct: 289 VGGVPSIRNKIRAYLNIRLLRNGVW 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,439
Number of Sequences: 5004
Number of extensions: 71860
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)