Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0175
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50110-4|CAA90443.2|  203|Caenorhabditis elegans Hypothetical pr...    56   3e-08
AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>Z50110-4|CAA90443.2|  203|Caenorhabditis elegans Hypothetical
           protein F18H3.1 protein.
          Length = 203

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 23/70 (32%), Positives = 40/70 (57%)
 Frame = +3

Query: 240 KRRSEVCGSGCALGNTPLLQNKAYFEVKLQQGGVWAVGLVTRETDLNRVHGGMDKDSWCL 419
           K    +CG G A+   P++QNKAYF+V +QQ G W +GL  +++  ++V     +  W +
Sbjct: 54  KEGERICGIGGAIATVPIVQNKAYFQVTVQQTGTWGIGLGQKQSPFDKV--PCTEKFWGI 111

Query: 420 NSDGTVRSDN 449
             +G +  +N
Sbjct: 112 RDNGDIAKEN 121



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%)
 Frame = +2

Query: 545 IENEKKDVSAAAVMPLEGDTIGVAYDHVELNFFLNGKNMEIPVRNIQGTGIFQLCTLMTA 724
           I  E + V+       EGD +GVAYDHVEL F++NGK +E  +  ++G  ++ +  +  +
Sbjct: 117 IAKENEVVAKMTKTVEEGDVVGVAYDHVELKFYVNGKAVEDVITGVRGP-VYPMVYVDDS 175

Query: 725 RYWDINXGQFPVSPTVG 775
              D+    F  +P  G
Sbjct: 176 AILDLKFKNFTEAPPAG 192


>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 309 YFEVKLQQG--GVWAVGLVTRETDLNRVHG 392
           YFEV++ +G  G   +GL  ++ DLNR+ G
Sbjct: 97  YFEVRILEGHSGCMGIGLSKKDCDLNRMPG 126


>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 671 VRNIQGTGIFQLCTLMTARYWDINXGQFPVSPT 769
           ++ I   G+F L  +    + D+  GQ P++PT
Sbjct: 367 LKTISNNGMFHLKNMYLTEFNDLGIGQIPLNPT 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,043,644
Number of Sequences: 27780
Number of extensions: 401530
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)