Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0175
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    24   1.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.0  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 357 VTRETD---LNRVHGGMDKDSWCLNSDGTVRSDNVE 455
           +TRE D   LNR+   +  ++W L +DG + + +V+
Sbjct: 1   LTREIDGFVLNRIQYAILNEAWRLVADGILNAKDVD 36


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 94  LKYIPIKKMFCCLKSCMNGFTLTPSVPVRIKENPVQ-LDTLHM 219
           LK  P+ +  C L+    G+T    V +  + +PVQ +  LH+
Sbjct: 164 LKLYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQVVKNLHL 206


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 94  LKYIPIKKMFCCLKSCMNGFTLTPSVPVRIKENPVQ-LDTLHM 219
           LK  P+ +  C L+    G+T    V +  + +PVQ +  LH+
Sbjct: 164 LKLYPLDRQVCSLRMASYGWTTDDLVFLWKEGDPVQVVKNLHL 206


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +3

Query: 234 DNKRRSEVCGSGCALGNTPLLQNKAYFEVKLQQGGVWAVGLVTRETDLNRVHGGMDK--D 407
           D+ R        C L     L  ++ + + LQ+G +WA  +     D +   G M+   +
Sbjct: 739 DSSRLEFEAAQDCELVTAGELFGRSGYGIGLQKGSLWADAVTLAILDFHE-SGFMESLDN 797

Query: 408 SWCLNSD 428
            W L S+
Sbjct: 798 HWILRSN 804


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 321 LLRNKLYSVTEGCCQ 277
           LLR K+Y   EG C+
Sbjct: 357 LLREKIYGALEGYCR 371


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 321 LLRNKLYSVTEGCCQ 277
           LLR K+Y   EG C+
Sbjct: 357 LLREKIYGALEGYCR 371


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 560 KDVSAAAVMPLEGDTIGVAYDHVELNFFLNGKNME 664
           K +S      L G  +   +   E+N+ L  KNME
Sbjct: 283 KKISELEKEMLNGQKLQGPFTAEEVNYMLKAKNME 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,832
Number of Sequences: 438
Number of extensions: 5180
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)