Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0175
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58550.1 68418.m07333 tetratricopeptide repeat (TPR)-containi...    30   2.2  
At5g44530.1 68418.m05455 subtilase family protein contains Pfam ...    28   8.7  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    28   8.7  

>At5g58550.1 68418.m07333 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 925

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 775 PDGWRYRKLSXINVPISRXHQ-RTKLEYTRXLDIPYRYLHILAVQEE 638
           P GW Y++ S  NV + +     T  E    L  PY+Y  ++  +++
Sbjct: 473 PHGWMYQERSLYNVGVEKLKDLATATELDPTLSFPYKYRAVMKFEQK 519


>At5g44530.1 68418.m05455 subtilase family protein contains Pfam
           profiles: PF00082 subtilase family
          Length = 840

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 731 NIAXSSTYKAGIYPXLGYSLQVSP 660
           NIA + TY  G  P  G S++VSP
Sbjct: 763 NIAGNETYNVGWSPPYGVSMKVSP 786


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 276 EHSPTHKPLTAFYYHHFISH 217
           E SPT+K LT FYY   ++H
Sbjct: 106 ELSPTYKRLTVFYYCFLLTH 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,088,232
Number of Sequences: 28952
Number of extensions: 382779
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)