Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0174
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55130.1 68418.m06872 molybdenum cofactor synthesis protein 3...    31   0.54 
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    29   2.9  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   5.0  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    27   8.8  

>At5g55130.1 68418.m06872 molybdenum cofactor synthesis protein 3 /
           molybdopterin synthase sulphurylase (CNX5) identical to
           SP|Q9ZNW0 Molybdenum cofactor synthesis protein 3
           (Molybdopterin synthase sulfurylase) (MPT synthase
           sulfurylase) {Arabidopsis thaliana}; contains Pfam
           profiles PF00899: ThiF family, PF00581: Rhodanese-like
           domain, PF05237: MoeZ/MoeB domain
          Length = 464

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 348 GNDYANHINDAQNSTNQLIDFVCYK--DGDRIALFIAEGGPECFQQKTXNLKTWLXNLKQ 521
           GN +AN     ++ TN  +  VC +  D  R   ++ E G +  +     L+ W  N+  
Sbjct: 404 GNGHAN----TESCTNPSVFVVCRRGNDSQRAVQYLRESGFDSAKDIIGGLEAWAANVNP 459

Query: 522 SFPT 533
           +FPT
Sbjct: 460 NFPT 463


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 55  ITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 234
           IT F   VL  +  +   V  +     N EDK+PE+++     G    G +D+ V    +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798

Query: 235 EE 240
           +E
Sbjct: 799 DE 800


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 79   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 210
            +AD   QI+AV   + T  +A +    V  A  ++G+C   L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 591 SSNXWRHFXXKAQSYWRXPQWGSSVSNXKAMS*DSQSFAGSTQGRL 454
           S++ +  F  K     +  +WG S  +    S  S+SF G + GRL
Sbjct: 431 STSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRSFYGGSPGRL 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,593,702
Number of Sequences: 28952
Number of extensions: 256477
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)