Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0173
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0307 - 2194796-2199274 30 2.3
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 29 5.4
10_01_0111 + 1384737-1386215 29 5.4
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 28 9.5
10_08_0305 - 16644276-16644290,16644611-16645258,16646764-166468... 28 9.5
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 28 9.5
03_05_0709 + 27032817-27033578 28 9.5
>07_01_0307 - 2194796-2199274
Length = 1492
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +2
Query: 515 KQSFPTVESANNLSLVEKCAKVDEMT---SCIVKSLEDVPHRHPQTWRNH*SSSCAKTLL 685
K+ FPT S + +V KC ++ E+ S EDV R +C K +
Sbjct: 943 KEIFPTFFSVLEVLIVRKCNELAELPFSYHTYCTSEEDVKATCFPRLRELEIHNCPKIVS 1002
Query: 686 AKPVXPRQTDCTVGLLSVNT 745
P+ QT C+V + V T
Sbjct: 1003 LPPIPYTQTLCSVNITDVGT 1022
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 243 QAKRALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNDYANHINDAQNSTNQLID 407
Q K+ L F YC S L I+ +L+ + + +HI++ T QLID
Sbjct: 122 QVKKELKAKFDSYCFVSVSLNPDINKILKNILLQLDEKMYSHIDETW-ETKQLID 175
>10_01_0111 + 1384737-1386215
Length = 492
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 402 IDFVCYKDGDRIALFIAEG--GPECFQQKTENLKTCFLI*NRASPLWNP 542
+D CY+ + ALF+A+G G ++ + ++ C + R+ P W P
Sbjct: 186 MDMPCYEWEQKAALFVADGASGMSIMKRCSLAMERCTVAAMRSCPEWEP 234
>10_08_0429 +
17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 INDAQNST--NQLIDFVCYKDGDRIALFIAEGGPECFQQKTENLKTCFLI*NR 521
I+D++N T IDF+C ++G+ A F+ PE + FLI N+
Sbjct: 661 IHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPSKMDLFLIPNK 713
>10_08_0305 -
16644276-16644290,16644611-16645258,16646764-16646865,
16646980-16647111,16647574-16648242
Length = 521
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Frame = -3
Query: 634 VSVWNIFEG-----FHDTGGHLINFCAFFNKAQVI 545
V +WN+ G F + GH+IN CA+F ++ I
Sbjct: 342 VKLWNVATGECSLKFSSSVGHIINSCAWFPNSEKI 376
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 79 LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 210
+AD QI+A V + T A + V+ A ++G+C+ L +
Sbjct: 1320 MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAE 1363
>03_05_0709 + 27032817-27033578
Length = 253
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = -2
Query: 683 GESLRMNLISDSAMFAGVGV----EHLRGISRYRRSSHQLLRIFQQGSSYWRIPQWG 525
GE+ R+ + D+ +F G+G EHL I + +L R + G W P G
Sbjct: 150 GEAQRLRPVMDTLLFGGLGARVADEHLPYIEHWDAMWEELTRWRRSGGGAWGGPFTG 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,040,073
Number of Sequences: 37544
Number of extensions: 437029
Number of successful extensions: 1098
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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