Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0173
         (774 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117178-1|AAI17179.1| 1332|Homo sapiens NPC1L1 protein protein.       31   4.6  
AY515256-1|AAS56939.1| 1332|Homo sapiens NPC1L1 splice variant p...    31   4.6  
AY437865-1|AAR97886.1| 1332|Homo sapiens Niemann-Pick C1-like 1 ...    31   4.6  
AF192522-1|AAF20396.1| 1359|Homo sapiens Niemann-Pick C1-like pr...    31   4.6  

>BC117178-1|AAI17179.1| 1332|Homo sapiens NPC1L1 protein protein.
          Length = 1332

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 710  SVXXRPVWQGESLRMNLISDSAMFAGVGVEHLRGISRYRRSSHQLLRIF 564
            ++  +P W   +    +   SA+FAGV + +L GI     +  QL++IF
Sbjct: 1190 AISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIF 1238


>AY515256-1|AAS56939.1| 1332|Homo sapiens NPC1L1 splice variant
            protein.
          Length = 1332

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 710  SVXXRPVWQGESLRMNLISDSAMFAGVGVEHLRGISRYRRSSHQLLRIF 564
            ++  +P W   +    +   SA+FAGV + +L GI     +  QL++IF
Sbjct: 1190 AISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIF 1238


>AY437865-1|AAR97886.1| 1332|Homo sapiens Niemann-Pick C1-like 1
            protein.
          Length = 1332

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 710  SVXXRPVWQGESLRMNLISDSAMFAGVGVEHLRGISRYRRSSHQLLRIF 564
            ++  +P W   +    +   SA+FAGV + +L GI     +  QL++IF
Sbjct: 1190 AISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIF 1238


>AF192522-1|AAF20396.1| 1359|Homo sapiens Niemann-Pick C1-like protein
            1 protein.
          Length = 1359

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 710  SVXXRPVWQGESLRMNLISDSAMFAGVGVEHLRGISRYRRSSHQLLRIF 564
            ++  +P W   +    +   SA+FAGV + +L GI     +  QL++IF
Sbjct: 1217 AISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIF 1265


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,399,783
Number of Sequences: 237096
Number of extensions: 2367013
Number of successful extensions: 5259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5259
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)