Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0173
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ...    28   6.0  
At5g40770.1 68418.m04948 prohibitin identical to prohibitin [Ara...    28   6.0  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   6.0  
At3g27280.2 68416.m03410 prohibitin, putative strong similarity ...    28   7.9  
At3g27280.1 68416.m03409 prohibitin, putative strong similarity ...    28   7.9  
At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR ...    28   7.9  

>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 55  ITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 234
           IT F   VL  +  +   V  +     N EDK+PE+++     G    G +D+ V    +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798

Query: 235 EE 240
           +E
Sbjct: 799 DE 800


>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 705 LGQTGLARRVFAHELDQ*FRHVCGCRCGTSSRDFTIQEV 589
           +G+T LAR+VF H+L +  RH  G      S+ FT++ V
Sbjct: 196 IGKTTLARQVFHHDLVR--RHFDGFAWVCVSQQFTLKHV 232


>At5g40770.1 68418.m04948 prohibitin identical to prohibitin
           [Arabidopsis thaliana] GI:1946331
          Length = 277

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 686 QGESLRMNLISDSAMFAGVGVEHLRGISRYRRSSHQLLR 570
           +GES    LISD+   AG+G+  LR I   R  +  L R
Sbjct: 220 EGESEAAQLISDATAKAGMGLIELRRIEASREIASTLAR 258


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 79   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 210
            +AD   QI+AV   + T  +A +    V  A  ++G+C   L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486


>At3g27280.2 68416.m03410 prohibitin, putative strong similarity to
           prohibitin [Arabidopsis thaliana] GI:1946331; contains
           Pfam profile PF01145: SPFH domain / Band 7 family
          Length = 279

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 686 QGESLRMNLISDSAMFAGVGVEHLRGISRYRRSSHQLLR 570
           +GES    LISD+   AG+G+  LR I   R  +  L R
Sbjct: 220 EGESEAAQLISDATAKAGMGLIELRRIEASREVAATLAR 258


>At3g27280.1 68416.m03409 prohibitin, putative strong similarity to
           prohibitin [Arabidopsis thaliana] GI:1946331; contains
           Pfam profile PF01145: SPFH domain / Band 7 family
          Length = 279

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 686 QGESLRMNLISDSAMFAGVGVEHLRGISRYRRSSHQLLR 570
           +GES    LISD+   AG+G+  LR I   R  +  L R
Sbjct: 220 EGESEAAQLISDATAKAGMGLIELRRIEASREVAATLAR 258


>At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 705 LGQTGLARRVFAHELDQ*FRHVCGCRCGTSSRDFTIQEVISSTFAHFSTRLK--LLADST 532
           LG+T LAR++F H  D+   H  G      S++FT ++V  +   + S + K   L +  
Sbjct: 191 LGKTTLARQIFDH--DKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDD 248

Query: 531 VGKLCFKL 508
           + K  F+L
Sbjct: 249 IQKKLFQL 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,058
Number of Sequences: 28952
Number of extensions: 347465
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)