Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0172
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    26   0.39 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    25   0.89 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.89 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.1  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    23   3.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.3  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 562 EITYTCETCGQTFTMHDRLR 621
           E  Y+C+ CG+ F   D LR
Sbjct: 105 ERPYSCDICGKAFRRQDHLR 124



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 669 RLYECEVCLRRFARSD 716
           R Y C++C + F R D
Sbjct: 106 RPYSCDICGKAFRRQD 121


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 675 YECEVCLRRFARS 713
           YEC++CL RF++S
Sbjct: 106 YECKLCLLRFSQS 118


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 675 YECEVCLRRFARS 713
           YEC++CL RF++S
Sbjct: 362 YECKLCLLRFSQS 374


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 352 PPVPWYRRTRWCLLRVPVPQEFWSNMIHVANAVP 251
           P VP+    R+C    PV  ++WS  + +    P
Sbjct: 248 PAVPYVPFYRYCYRPYPVYNQWWSGPLSMYYQYP 281


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 636 LDTGIALRXAARLYECEVCLRRFAR 710
           L T + L    R Y CE C R+F +
Sbjct: 25  LKTHMRLHTGERPYRCEHCDRQFVQ 49


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 675 YECEVCLRRFARSD 716
           + C +C +RF RSD
Sbjct: 375 FACPICNKRFMRSD 388


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 636 LDTGIALRXAARLYECEVCLRRFAR 710
           L T + L    R Y CE C R+F +
Sbjct: 178 LKTHMRLHTGERPYRCEHCDRQFVQ 202


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 374 CVFGGEPAACAMVPTNPLVPSAC 306
           C+F G     ++ P NP+  + C
Sbjct: 552 CLFDGRDCEESLQPCNPIYDAYC 574


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,923
Number of Sequences: 336
Number of extensions: 4312
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)