Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0172
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    29   0.56 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   2.3  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   5.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.2  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
 Frame = +1

Query: 274 SCWTKTLVAPGHAEGTSGFVGTMAQAAGSPPNTQNLNKRQRLSRLLDKLSVQLQNNNLYP 453
           S  TK+ V+  H+  +S     M ++   P N  +   +Q  S L    S+   ++N + 
Sbjct: 292 SSQTKSAVSNNHSRNSSKDASFMMKSF-IPSNRSHPQTQQNESSLFSDNSMVNSSSNSFS 350

Query: 454 --PTQHWP------ALNPPFQNNKPPEMSL*ISRLSTSSHSPAPEITYT 576
             P    P       L  PFQ  KPP      + L +  H P   I +T
Sbjct: 351 LFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGLLSKQHRPRKNINFT 399


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 647 SCVEKQYVWRRRSCMVKVWPQVSHVYVISGAGEWLLVL 534
           S  +K  V  R + ++  WP V H++    AG+W   L
Sbjct: 177 SAAQKDRVHLRSNTLINTWPNVGHLF----AGKWKTTL 210


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 484 PFQNNKPPEMSL*ISRLSTSSHSPAPEITYTCETCGQTFTMHDRLRQTYCFSTQESHS 657
           P++ + P  +    S  + SS+S AP I  T  T  +    HD +  +   ST +SHS
Sbjct: 732 PYKTSLPTIVEATTSH-TESSNSKAPAIEETTTTKVEVVAAHDAVSISSNSSTHKSHS 788


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 532 LSTSSHSPAPEITYTCETCGQTFTMHDR 615
           +S  + + A E TYTCE C Q  T+ +R
Sbjct: 526 VSKPTENSADE-TYTCEECEQKITLSER 552


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 436 NNNLYPPTQHWPALNPPFQNNKPPEMSL*ISRLSTSSHSPAPEITYT 576
           NN +Y P +  P +N    N  P   S   S  +  S+SPA   +YT
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYT 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,216
Number of Sequences: 5004
Number of extensions: 65864
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)