Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0172
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1038 - 22485394-22485960,22486712-22487197 31 1.0
02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298... 29 4.1
10_08_0328 - 16805296-16806121,16806493-16807274 29 5.4
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 29 5.4
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331... 28 7.2
12_01_0225 + 1714146-1714445,1714495-1714764 28 9.5
11_06_0588 + 25272067-25274850 28 9.5
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 28 9.5
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 28 9.5
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213 28 9.5
04_04_0054 + 22400278-22400420,22400545-22401037 28 9.5
03_05_0291 - 22837412-22838128 28 9.5
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 9.5
01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242... 28 9.5
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 599 SPCTTAFAKHIASRHRNRTPGXGAAI*MRGMPETVC-SLGHVTRQGSFCTAAFKP 760
+P +TA AK +R RTPG G A+ +RG +T+ + H S C AA P
Sbjct: 54 TPASTA-AKARPTRASRRTPGSGEAL-LRGQVKTLLQKVHHDASSSSSCAAAAPP 106
>02_04_0650 +
24728700-24728725,24729582-24729660,24729802-24729889,
24730216-24730297,24731083-24731278,24731432-24731816,
24733332-24734428,24734621-24734886,24735565-24735631,
24735722-24735772,24736033-24736123,24736239-24736345
Length = 844
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 317 PSACPG-ATRVLVQHDSRR-ECSSNCGNRMHLSVMSIAITKHFRMFV 183
P C G TR ++ R+ C+ NCGNR V+ IT+H ++F+
Sbjct: 612 PGPCKGHLTRKFIKECWRKCGCTRNCGNR----VVQRGITRHLQVFL 654
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 346 QAAGSPPNTQNLNKRQRLSRLLDKLSVQLQNNNLYP--PTQHWPALNPPFQNNKPPEMSL 519
Q GS N+ N + RLL ++ L NN L P W N F + + S
Sbjct: 351 QGVGSSGNSSNCSSGSAFCRLLSLENLDLSNNKLTGKLPDCWWNLQNLQFMDLSHNDFSG 410
Query: 520 *ISRLSTS 543
IS L TS
Sbjct: 411 EISALGTS 418
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/70 (32%), Positives = 29/70 (41%)
Frame = -2
Query: 550 NGCSCLTERSKGSSQVAYCFGMVGSALANVVLVDTNYCFATAHLVCRGDARDAGVC*DSA 371
N S R+ SS Y G G + D Y +A +CRGD DA C
Sbjct: 60 NRLSATLPRNTSSSPAMYATGAAGD------VPDKVYGYA----LCRGDVADAHAC--ER 107
Query: 370 CLAASLPPVP 341
C+AA+L P
Sbjct: 108 CVAAALRDAP 117
>03_05_0732 -
27232299-27232535,27232717-27232746,27233094-27233155,
27233975-27234005,27234618-27234713,27234881-27234969,
27235687-27236263
Length = 373
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 421 SVQLQNNNLYPPTQHWPALNPPFQNNKPPEMSL*ISRLSTSSHSPAP 561
SV ++ L P H L PP Q + P S+ I RL H P P
Sbjct: 10 SVGSHSSALPPSYHHHRRLPPPQQQHPDPLNSVWIRRLHLLPHQPPP 56
>12_01_0225 + 1714146-1714445,1714495-1714764
Length = 189
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 645 GIALRXA--ARLYECEVCLRRFARSDM 719
G+AL A AR EC VCLR F DM
Sbjct: 122 GLALTKACDARQEECAVCLRDFEEKDM 148
>11_06_0588 + 25272067-25274850
Length = 927
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 259 HSRRESCWTKTLVAPGHAEGTSGFVGTMAQ--AAGSPPNTQNLNKRQRLSRLLDKLSV 426
H + + W K V H V AQ AAG PP+ L+ QR+SRL+ LSV
Sbjct: 68 HYNKCAPWIKQAVELAH--DCQDCVEQYAQCVAAGRPPSKGLLSHFQRVSRLVRNLSV 123
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 517 GSSQVAYCFGMVGSALANVVLVDTNYCFATAHLVCRGDARD 395
GS + Y G GS VL +T++CF HL G D
Sbjct: 185 GSGIMGY-LGNKGSVSIRFVLHETSFCFVCCHLASGGKQGD 224
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 559 GPANGCSCLT-ERSKGSSQVAYCFGMVGSALANVVLVDTNYC 437
G ANG T + KGS++ MV + N +++D NYC
Sbjct: 278 GTANGARIKTWQGGKGSAKNIVFQNMVMDNVWNPIIIDQNYC 319
>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
Length = 491
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 569 VISGAGEWLLVLNREI*RLISGGLLFWNGGFS 474
V+ G GEW +V R ++ GG F+ GF+
Sbjct: 68 VVDGGGEWGMVRTRGAQFVVGGGRPFYVNGFN 99
>04_04_0054 + 22400278-22400420,22400545-22401037
Length = 211
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 352 PPVPWYRRTRWCLLRVPVP 296
P YRR WCL+R P P
Sbjct: 55 PRATAYRRCNWCLVREPAP 73
>03_05_0291 - 22837412-22838128
Length = 238
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 472 ALNPPFQNNKPPEMSL*ISRLSTSSH--SPAPEITYTCETCGQTFTMHDRL 618
A PP ++ ++L + L+ SPAP+ + C CG+ F+ + L
Sbjct: 54 AAAPPPHGSEEEHLALSLLMLARGHRDPSPAPQEQHGCSVCGRVFSSYQAL 104
>03_03_0186 + 15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 523 ISRLSTSSHSPAPEITYTCETCGQTFTMH 609
+++L++S H P +++YTCET + +H
Sbjct: 993 VAKLASSLHLPE-DVSYTCETAAYFWLLH 1020
>01_06_0614 +
30621495-30621670,30621817-30622036,30623848-30624270,
30624523-30624906,30624991-30625086,30625161-30625276,
30625431-30625598,30625685-30625844,30625999-30626196,
30626304-30626432,30626595-30626673,30627010-30627119
Length = 752
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 340 WYRRTRWCLLRVPV 299
WYRRT W L VPV
Sbjct: 397 WYRRTTWMYLSVPV 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,528,005
Number of Sequences: 37544
Number of extensions: 533502
Number of successful extensions: 1754
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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