Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0172
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.0
SB_44540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_24929| Best HMM Match : ig (HMM E-Value=8.2e-06) 29 4.2
SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.2
SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37) 29 5.5
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 5.5
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40) 29 5.5
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 29 5.5
SB_30807| Best HMM Match : I-set (HMM E-Value=7.8e-08) 28 7.3
SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39) 28 7.3
SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6) 28 7.3
SB_18843| Best HMM Match : I-set (HMM E-Value=1e-07) 28 7.3
SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2) 28 9.7
SB_13724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05) 28 9.7
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 28 9.7
SB_26187| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 24 9.9
>SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 425
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 535 STSSHSPAPEITYTCETCGQTFTMHDRLRQTYCFSTQESHSGXRRGYMNARYA*DGLL 708
STS P+ YTCE CG+ FT L T H + Y R+A G+L
Sbjct: 250 STSQPEDKPK-EYTCEFCGRAFTHLSSLNNH--TRTHTGHKPFKCDYCGKRFAQSGVL 304
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 411 EETRETLAF-VEILRVWRRACRLCHGTDEP 325
+ T+ T A+ E+ + WRR C + H T +P
Sbjct: 225 DATKSTKAYGEEMSKHWRRMCAILHSTSQP 254
>SB_44540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 376 NLNKRQRLSRLLDKLSVQLQNNNLYPPTQHWPALNPPFQNN-KPPEMSL*ISRLSTSSHS 552
+++KR L + L S + NN+YP Q P L+PP + + P + + L
Sbjct: 246 DISKRLELRKRLKCKSFKWYINNIYPDVQ-MPELDPPARGEVRNPSSNQCLDSLGAKPEH 304
Query: 553 PAPEITYTCETCG 591
A YTC G
Sbjct: 305 NARVGIYTCHGQG 317
>SB_24929| Best HMM Match : ig (HMM E-Value=8.2e-06)
Length = 186
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 469 PALNPPFQNNKPPEMSL*ISRLSTSSHSPAPEITYTCETCG 591
PALNPP + S ++S PAP +T+ +T G
Sbjct: 98 PALNPPLNGSHDVAEDTDFSITCSASGRPAPNVTWVNKTSG 138
>SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 268
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 544 SHSPAPEITYTCETCGQTFT 603
SH + YTCETCG+TF+
Sbjct: 236 SHKRSHLPKYTCETCGETFS 255
>SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)
Length = 875
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 526 SRLSTSSHSPAPEITYTCETCGQTFTMHDRLRQTYCFSTQESHS 657
+R ST + ++ Y + T T+H+RL Q + TQ++HS
Sbjct: 12 NRYSTIHNRLIQQVQYYTQQTYATGTIHNRLMQQVQYYTQQTHS 55
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 562 EITYTCETCGQTFTMHDRLRQTYCFSTQESHS 657
++ YT + C + T+H+RL Q + TQ++++
Sbjct: 3 QVLYTTDLCNRYSTIHNRLIQQVQYYTQQTYA 34
>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 431
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 636 LDTGIALRXAARLYECEVCLRRFARSD 716
L T I + + CE C RRFARSD
Sbjct: 348 LTTHIRTHTGEKPFACETCGRRFARSD 374
>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
Length = 595
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 571 YTCETCGQTFTMHDRLRQ 624
Y CE+C + FT H LRQ
Sbjct: 519 YQCESCSKAFTNHSTLRQ 536
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 636 LDTGIALRXAARLYECEVCLRRFARSD 716
L T I + + CE C RRFARSD
Sbjct: 586 LTTHIRTHTGEKPFACETCGRRFARSD 612
>SB_30807| Best HMM Match : I-set (HMM E-Value=7.8e-08)
Length = 148
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 469 PALNPPFQNNKPPEMSL*ISRLSTSSHSPAPEITYTCETCG 591
PA NPP ++ S ++S PAP +T+ +T G
Sbjct: 10 PAFNPPLDRSRDVAEDKDFSITCSASGRPAPNVTWVNKTSG 50
>SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)
Length = 378
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 469 PALNPPFQNNKPPEMSL*ISRLSTSSHSPAPEITYTCETCG 591
PA NPP ++ S ++S PAP +T+ +T G
Sbjct: 10 PAFNPPLDRSRDVAEDKDFSITCSASGHPAPNVTWVNKTSG 50
>SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6)
Length = 437
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 253 ELHSRRESCWTKTLVAPGHAEGTS 324
ELH RR CW K + H GT+
Sbjct: 256 ELHDRRSGCWNKRGRSSVHQSGTA 279
>SB_18843| Best HMM Match : I-set (HMM E-Value=1e-07)
Length = 339
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 469 PALNPPFQNNKPPEMSL*ISRLSTSSHSPAPEITYTCETCG 591
PA NPP ++ S ++S PAP +T+ +T G
Sbjct: 251 PAFNPPLDRSRDVAEDKDFSITCSASGRPAPNVTWVNKTSG 291
>SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2)
Length = 226
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 123 LPTLPTVHHTHLDSTTKLCINKHTKVFRDRNGHYGQMHPIPAIGT 257
+P+LP + T KL +N H ++ R R HP P + T
Sbjct: 107 VPSLPERQMGQRNLTNKLLMNLHVRLRRWRRESRAPNHPRPGLNT 151
>SB_13724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 123 LPTLPTVHHTHLDSTTKLCINKHTKVFRDRNGHYGQMHPIPAI 251
L TL T D T K C+ + K R+R GH+ + +P+I
Sbjct: 2 LLTLETCCGYEYDRTRKSCLPRIFKGRRERTGHHRKCGALPSI 44
>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 809
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 123 LPTLPTVHHTHLDSTTKLCINKHTKVFRDRNGHYGQMHPIPAIGT 257
+P+LP + T KL +N H ++ R R HP P + T
Sbjct: 168 VPSLPERQMGQRNLTNKLLMNLHVRLRRWRRESRAPNHPRPGLNT 212
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 123 LPTLPTVHHTHLDSTTKLCINKHTKVFRDRNGHYGQMHPIPAIGT 257
+P+LP + T KL +N H ++ R R HP P + T
Sbjct: 342 VPSLPERQMGQRNLTNKLLMNLHVRLRRWRRESRAPNHPRPGLNT 386
>SB_26187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 465 MLCWWIQIIVLQLHT*FVEETRETLAFVEI 376
M+CW Q ++ LH F +ET LAF E+
Sbjct: 264 MICWIPQHTLVILHNFFWDETLSHLAFEEL 293
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 24.2 bits (50), Expect(2) = 9.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 216 GHYGQMHPIP 245
GH GQ+HPIP
Sbjct: 972 GHKGQVHPIP 981
Score = 21.8 bits (44), Expect(2) = 9.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 201 FRDRNGHYGQMHPI 242
F GH GQ+HPI
Sbjct: 936 FIPSTGHKGQVHPI 949
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,586,350
Number of Sequences: 59808
Number of extensions: 595430
Number of successful extensions: 2167
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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