Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0172
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.037
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.79 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   1.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 544 SHSPAPEITYTCETCGQTFTMHDRLRQTYCFSTQE 648
           SH    E  Y C  CG+TF +  RL + Y   T E
Sbjct: 83  SHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGE 117



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 529 RLSTSSHSPAPEITYTCETCGQTF 600
           +L   + +   E  YTC+ CG++F
Sbjct: 218 QLKVHTRTHTGEKPYTCDICGKSF 241



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 526 SRLSTSSHSPAPEITYTCETCGQTFTMHDRL 618
           +RL+    +   E  Y CE C ++F++ + L
Sbjct: 105 ARLTRHYRTHTGEKPYQCEYCSKSFSVKENL 135



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 562 EITYTCETCGQTFTMHDRLR 621
           E  Y C+ CG+ FT   +L+
Sbjct: 201 EKPYVCKACGKGFTCSKQLK 220



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 669 RLYECEVCLRRFARS 713
           R Y+C+VC R F  S
Sbjct: 146 RPYKCDVCERAFEHS 160


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 559 PEITYTCETCGQTFT 603
           P + YTC+ CG+T +
Sbjct: 368 PGVCYTCDVCGKTLS 382


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 653 CDSCVEKQYVWRRRSCM 603
           CD C E +YV+   +CM
Sbjct: 560 CDQCEEYEYVYDEYTCM 576


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 653 CDSCVEKQYVWRRRSCM 603
           CD C E +YV    +CM
Sbjct: 470 CDQCEEYEYVHDEYTCM 486


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -1

Query: 638 EKQYVWRRRSCMV--KVWPQVSHVYVI 564
           +KQY WR  S ++    +  +S VY+I
Sbjct: 385 KKQYTWRHTSVLIGWSAFLCISLVYII 411


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 753 KAAVQNEPCRVTCP 712
           KA V  E  RVTCP
Sbjct: 500 KAIVAGETLRVTCP 513


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 508 EMSL*ISRLSTSSHSPAPEITYTCETCGQTFTMHDRLRQT 627
           E  L + R  T S SP            +TF + D+L  +
Sbjct: 75  EKKLVLERSKTKSKSPESRDRSNTSNTSKTFILSDKLESS 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,902
Number of Sequences: 438
Number of extensions: 5420
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)