Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0172
(776 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containi... 33 0.21
At5g66740.1 68418.m08413 hypothetical protein contains Pfam prof... 31 0.85
At2g01900.1 68415.m00124 endonuclease/exonuclease/phosphatase fa... 30 2.0
At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein si... 29 2.6
At4g25030.2 68417.m03591 expressed protein 29 3.4
At4g25030.1 68417.m03590 expressed protein 29 3.4
At1g60230.1 68414.m06783 radical SAM domain-containing protein ... 29 4.5
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb... 28 6.0
At1g47765.1 68414.m05312 F-box family protein contains F-box dom... 28 6.0
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 7.9
>At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1184
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 534 KHEQPFAGPRDNVYMRNLRPNLHHARPPSPNILLLDTGIALR 659
KHE FAG + +Y R LR HH+R P + L ++GI LR
Sbjct: 58 KHEDEFAGEVEKIY-RILRN--HHSRVPKLELALNESGIDLR 96
>At5g66740.1 68418.m08413 hypothetical protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 247
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 351 GRLAAKHAESQQTPASLASPR 413
GRL+ +H+ +QQTPAS +PR
Sbjct: 60 GRLSWRHSSNQQTPASTGTPR 80
>At2g01900.1 68415.m00124 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 417
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 496 CFGMVGSALANVVLVDTNYCFATAHLVCRGDARD 395
C G GS L +T +CF +HL G RD
Sbjct: 192 CLGNKGSVSVRFQLHETTFCFVCSHLASGGRDRD 225
>At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein
similar to beta-amylase GI:13560977 from [Castanea
crenata]
Length = 691
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 379 DSACLAASLPPVPWYRRT 326
DS+C+AA LP V W+ RT
Sbjct: 523 DSSCIAAKLPDVHWWYRT 540
>At4g25030.2 68417.m03591 expressed protein
Length = 344
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -3
Query: 717 CP---SEQTVSGIPRI--HIAAPXPGVRFLCREAICLAKAVV 607
CP S + VSG+ + I P PG++F C +AI A+A +
Sbjct: 148 CPIAKSYRAVSGVAPLVAKILQPPPGMKFKCPQAIVTARAAI 189
>At4g25030.1 68417.m03590 expressed protein
Length = 344
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -3
Query: 717 CP---SEQTVSGIPRI--HIAAPXPGVRFLCREAICLAKAVV 607
CP S + VSG+ + I P PG++F C +AI A+A +
Sbjct: 148 CPIAKSYRAVSGVAPLVAKILQPPPGMKFKCPQAIVTARAAI 189
>At1g60230.1 68414.m06783 radical SAM domain-containing protein
contains Pfam profile PF04055: radical SAM domain
protein
Length = 458
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 547 GCSCLTERSKGSSQVAYC--FGMVGSALANVVLVDTNY 440
GC+ L S+G+ Q+A C GM+G+ A V+ V +
Sbjct: 413 GCTVLMRFSRGNDQMAACGQLGMIGAVQAPVMRVPEQF 450
>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
(RbohA) / NADPH oxidase identical to respiratory burst
oxidase protein A from Arabidopsis thaliana [gi:3242781]
Length = 902
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 343 PWYRRTRWCLLRVPV 299
PWY++T W L VPV
Sbjct: 552 PWYKKTTWMYLMVPV 566
>At1g47765.1 68414.m05312 F-box family protein contains F-box domain
Pfam:PF00646
Length = 385
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 370 CLAASLPPVPWYRRTRWCLLRVPVPQEFWSNMIHVANAVPIAG 242
C S P+ W R L+ +P+P+ W+N+I P+ G
Sbjct: 125 CFKTSKMPIVWNPSKRQ-LITLPIPRLSWNNIIVFLGYDPVEG 166
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 347 CAMVPTNPLVPSA-CPGATRVLVQHDSRRECSSNCGNRMHLSVMSIAITKHFRM 189
C +PT+ +P+ C A V ++HD + + + CG + L +I+ + R+
Sbjct: 773 CKRIPTDIDLPAIDCDKAIMVTLKHDDKLQDGAECGFQCALLYTTISGERRIRV 826
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,102,840
Number of Sequences: 28952
Number of extensions: 385114
Number of successful extensions: 1268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -