Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0169
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.6  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   2.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   8.7  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.7  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 373  YCLFTCCLNVSCSTSIIYNRKIIAFIYNVASSTTV 477
            Y + + CL++  S  ++Y R   AF+ NV +S  +
Sbjct: 1114 YSMDSSCLDIGVSIILVYVRDTRAFVANVGTSMAI 1148


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 130 PTNINYIHRNHCKGTSHPRSTSSVFYI 50
           PT  + +H NHC  +   RS+S+  Y+
Sbjct: 487 PTAEDQVHNNHCAVSPSRRSSSNALYL 513


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 52  CKKPNWLIADEKYLCNDYDVCNLCL 126
           C++P   +  +  +C+DYD+C  CL
Sbjct: 139 CEQPIHNVRYKCSVCDDYDICESCL 163


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 147 VDSFCRPRSVTNGFPLTRNESNIVIFNDDRHFYFYLC 257
           + S C   +V    PL    SN+ +F++  H  F  C
Sbjct: 31  IPSLCCSLAVFPSIPLINTHSNLCLFSNFSHSCFLFC 67


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 13  SYRIISRCLNRKECKKPNWLIADEKYLCND-YDVCNLCLWALR 138
           SYR    CL ++    P  L AD+  +C D  D  + C W  R
Sbjct: 118 SYRGSVVCLFKRSKFLPEELPADKSQICTDIIDDASGCAWETR 160


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 61  PNWLIADEKYLCNDYDVCNLCL 126
           P WLI   ++ C+   V NLC+
Sbjct: 135 PTWLIRVSQHTCDRKAVANLCI 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,714
Number of Sequences: 5004
Number of extensions: 48691
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)