Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0169
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06750.1 68414.m00717 hypothetical protein                          30   1.9  
At3g24200.1 68416.m03037 monooxygenase family protein low simila...    29   3.3  
At2g30630.2 68415.m03733 expressed protein similar to H1-1flk [A...    28   5.8  
At2g30630.1 68415.m03732 expressed protein similar to H1-1flk [A...    28   5.8  

>At1g06750.1 68414.m00717 hypothetical protein
          Length = 495

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 152 IYPRLRNAHKHKLHTS*SLQRYFSSAINQFGF 57
           I PRL+++HKHK H    L+R+      Q GF
Sbjct: 18  IIPRLKSSHKHKGHE--KLERFSHYVARQMGF 47


>At3g24200.1 68416.m03037 monooxygenase family protein low
           similarity to VisC [Escherichia coli][GI:216629];
           contains Pfam profile: PF01360 Monooxygenase
          Length = 507

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 226 LNITIFDSFRVKGKPLVTERGRQNESTHXSVTPTNINYI 110
           LN+ I D+  + G+  + E+G Q +    +VTP  I+++
Sbjct: 81  LNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISFL 119


>At2g30630.2 68415.m03733 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 552

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 146 PRLRNAHKHKLHTS*SLQRYFSSAINQFGF 57
           PRLR++ KHK H    L+R+    + Q GF
Sbjct: 58  PRLRSSQKHKGHE--KLERFSHYVVRQMGF 85


>At2g30630.1 68415.m03732 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 531

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 146 PRLRNAHKHKLHTS*SLQRYFSSAINQFGF 57
           PRLR++ KHK H    L+R+    + Q GF
Sbjct: 58  PRLRSSQKHKGHE--KLERFSHYVVRQMGF 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,104
Number of Sequences: 28952
Number of extensions: 240281
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)