Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0168
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451...    28   7.1  
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402...    28   9.4  

>04_04_1247 -
           32043776-32043880,32044296-32044505,32044595-32045101,
           32045362-32045583,32046054-32046184,32046737-32047745,
           32047830-32047904,32047995-32048066,32048153-32048328,
           32048494-32048646,32048739-32049234
          Length = 1051

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 211 FDSFRVKGKPLVTERGRQNESTHGSVTPTNINY 113
           F S   K +PL    G   ESTH +V P  ++Y
Sbjct: 103 FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHY 135


>06_01_0570 +
           4026889-4027537,4028340-4028689,4029258-4029433,
           4029593-4029659,4029746-4029780,4030084-4030186,
           4031606-4031699,4031764-4031813,4031889-4032000,
           4032275-4032401,4032491-4032941
          Length = 737

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 43  RKECKKPNWLIADEKYLCNDYDVCNLCLWALRS 141
           +KECK  N  + D + L  DYD   +CL A  S
Sbjct: 528 QKECKLYNEHVDDLQQLAGDYDSVIICLGARAS 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,793,697
Number of Sequences: 37544
Number of extensions: 303935
Number of successful extensions: 526
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)