Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0168
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  29   5.4  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   29   5.4  

>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 378 LFTCCLNVSCSTSIIYNRKIIAFI---YNVASSTTVQCF 485
           LF  CLN +CS + +Y+ +++ F+   YN +  + +  +
Sbjct: 46  LFFVCLNYNCSRASVYDLRVLFFVCLNYNYSRVSVIYAY 84



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 378 LFTCCLNVSCSTSIIYNRKIIAFI 449
           LF  CLN +CS + +Y+ +++ F+
Sbjct: 26  LFFVCLNYNCSRASVYDLRVLFFV 49


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 378 LFTCCLNVSCSTSIIYNRKIIAFI---YNVASSTTVQCF 485
           LF  CLN +CS + +Y+ +++ F+   YN +  + +  +
Sbjct: 46  LFFVCLNYNCSRASVYDLRVLFFVCLNYNYSRVSVIYAY 84



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 378 LFTCCLNVSCSTSIIYNRKIIAFI 449
           LF  CLN +CS + +Y+ +++ F+
Sbjct: 26  LFFVCLNYNCSRASVYDLRVLFFV 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,466,290
Number of Sequences: 59808
Number of extensions: 394635
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)