Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0168
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 375 CLFTCCLNVSCSTSIIYNRKIIAFIYNVASSTTVQ 479
           C F   ++V+CSTS I+N   I+    +A +  ++
Sbjct: 259 CDFYIAMDVTCSTSSIFNLVAISIDRYIAVTQPIK 293


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 614 CLGKQLQITYKITTKRLLAFYIILLI 691
           C    L IT+ IT +R   FY + LI
Sbjct: 223 CDEPYLDITFNITMRRKTLFYTVNLI 248


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 614 CLGKQLQITYKITTKRLLAFYIILLI 691
           C    L IT+ IT +R   FY + +I
Sbjct: 227 CDEPYLDITFNITMRRKTLFYTVNII 252


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 614 CLGKQLQITYKITTKRLLAFYIILLI 691
           C    L IT+ IT +R   FY + +I
Sbjct: 227 CDEPYLDITFNITMRRKTLFYTVNII 252


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 614 CLGKQLQITYKITTKRLLAFYIILLI 691
           C      IT+ IT +R   FY + LI
Sbjct: 232 CTEPYSDITFNITMRRKTLFYTVNLI 257


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 120 MFVGVTEPWVDSFCRPRSVTNGFPLT 197
           M++ V +  V S  RPRS   G P T
Sbjct: 199 MYISVFKAEVGSKLRPRSSFQGPPFT 224


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 101 ITMYVIYVCGRYGAVGRFILPTTLG 175
           +   V+Y+  R+   GRF L  T G
Sbjct: 578 VVALVLYLLDRFSPFGRFKLANTDG 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,316
Number of Sequences: 438
Number of extensions: 4376
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)