Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0167
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   5.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   5.0  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   8.7  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   8.7  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +3

Query: 318  EXTNNFIXATKXALDAXMETHEEKREAYINELRSRLKDHLXGVEKTXXTLEQQTAEVYKA 497
            E T   +  T       +E+    RE  I  LRS L D    VE      E  + E+ K 
Sbjct: 977  EKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQ 1036

Query: 498  IED 506
            +ED
Sbjct: 1037 LED 1039


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 127 VILAEPVGVPVPRRADSPEKTPSVEEIQXKL 219
           V L +P+  P P  A+S + T S E++  +L
Sbjct: 182 VSLPQPIAAPAPPSAESSKSTISDEDVAWQL 212


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = +3

Query: 324 TNNFIXATKXALDAXMETHEEKREAYINELRSRLKDHLXGVEKTXXTLEQQTAEVYK 494
           T N I + +    +  + HEE  +    ELR+++++++   E+          E+Y+
Sbjct: 85  TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQ 141


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 396  AYINELRSRLKDHLXGVEKTXXTLEQQTAEVYKAIED 506
            A IN+  ++  + L G+E T   LE+ +AE    I+D
Sbjct: 949  AQINDHLAQRGNMLGGIENTMDDLEEMSAEWANEIKD 985


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 107 LRHLLVSGFRWI*FQLPWLPLLTDR 33
           L H L  GF  + F  PWLPL  +R
Sbjct: 203 LYHDLDQGFSPVNFVFPWLPLPRNR 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,514
Number of Sequences: 5004
Number of extensions: 22354
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)