Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0167
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)               33   0.18 
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)                     28   5.2  
SB_12334| Best HMM Match : 7tm_1 (HMM E-Value=0.35)                    28   5.2  
SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_24737| Best HMM Match : KID (HMM E-Value=0.096)                     27   9.1  
SB_11636| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
          Length = 299

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 369 METHEEKREAYINELRSRLKDHLXGVEKTXXTLEQQTAEVYKAIEDK 509
           ME  +EKR++Y+  L++RL +    VE+   T+E+      K +E+K
Sbjct: 209 MEMTKEKRDSYMEALKTRLHEKSLDVEQKRQTMEEIQMFQRKILEEK 255


>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 300 PPRSWPSSEQWRPSY 256
           PP ++PSS+QW P+Y
Sbjct: 508 PPGAYPSSDQWIPAY 522


>SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)
          Length = 389

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 309 CGTPPRSWPSSEQWRPSYCFQATSPLFSCLQL 214
           C  PP   P    W  S C Q+T P F  +Q+
Sbjct: 349 CLNPPMDKPPEGHWMCSLCRQSTMPPFMQMQM 380


>SB_12334| Best HMM Match : 7tm_1 (HMM E-Value=0.35)
          Length = 311

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +1

Query: 97  RCRRXGLAYEVILAEPVGVPVPRRADS----PEKTPSVEEIQXKLKAAEERRRSL 249
           RC+R   A +++  +P+G   PR   S    P  T +   IQ   K+     RSL
Sbjct: 143 RCKRFNQALKLLCKDPLGTSEPRENASYNKRPLSTSACSSIQYSNKSFTSNERSL 197


>SB_55243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 370 WRPTRKNARPTSTSCXPVSRIIL 438
           W   RK ARP S SC P   ++L
Sbjct: 7   WEQRRKPARPRSNSCSPGDPLVL 29


>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
          Length = 636

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 384 EKREAYINELRSRLKDHLXGVEKTXXTLEQQTAEVYKAIEDK 509
           E RE  I++L   LKD      +   TLEQ  A++ + +E K
Sbjct: 148 EDREKSIDKLEKELKDQEAKHNRQKNTLEQTVAKMKEVMERK 189


>SB_11636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 136 AEPVGVPVPRRADSPEKTPSVEEIQXKLKAAEERRRS 246
           ++P G P P++  SP+K   +   +  L+AA+  R S
Sbjct: 23  SKPTGKPTPQQFRSPQKVVQISVPRAGLQAAQNARYS 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,729
Number of Sequences: 59808
Number of extensions: 188134
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)