Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0167
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    29   2.6  
U41108-1|AAQ23120.1|  308|Caenorhabditis elegans Tropomodulin pr...    27   8.1  

>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 22  VSKSLSVKSGSHGS*N*IHRNPLTKRCRRXGLAYEVIL-AEPVGV-PVPRRADSPEKTPS 195
           +S +  +  G H   N   RN   KR +R   A +  L AE +   PVP+ A  P+K P 
Sbjct: 219 ISINFRLPEGRHKVENATLRNGELKRVKRREAAQKARLEAEELAKNPVPKLAPEPKKEPE 278

Query: 196 VEEIQXKLKAA 228
            +++  K+  A
Sbjct: 279 PKKMAPKIPPA 289


>U41108-1|AAQ23120.1|  308|Caenorhabditis elegans Tropomodulin
           protein 2, isoform a protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 22  VSKSLSVKSGSHGS*N*IHRNPLTKRCRRXGLAYEVIL-AEPVGV-PVPRRADSPEKTPS 195
           +S +  +  G H   N   RN   KR +R   A +  L AE +   PVP+ A  P+K P 
Sbjct: 219 ISINFRLPEGRHKVENATLRNGELKRVKRREAAQKARLEAEELAKNPVPKLAPEPKKEPE 278

Query: 196 VEEIQXK 216
            +++  K
Sbjct: 279 PKKMAPK 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,176,526
Number of Sequences: 27780
Number of extensions: 133135
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)