Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0167
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    24   1.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.2  

>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 2   ASDAIQLFRSLCRLKVEAMEVETKSTEIR*PRDVEG 109
           +SD I LFR    +++ A E++    EIR  RD+ G
Sbjct: 108 SSDDISLFRGPEGIQINATELQKIELEIR--RDLPG 141


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 336 IXATKXALDAXMETHEEKREAYINELRSRLKDHLXGVEKTXXTLEQQTAEVYKAIEDK 509
           + A K  L   ++ H +  +   N L   + D L  +++T     Q+TA+ +K ++DK
Sbjct: 351 LEAEKKNLSKVIDQHSQLIDTLENVLA--IVDRL--MDETNQLTLQETADAFKDLQDK 404



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 59  PWLPLLTDR 33
           PWLPLL +R
Sbjct: 545 PWLPLLRNR 553


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 522 AAVVIYLRWPCTLPRSAVPGXXWSSXRXQDDP*D 421
           AAV+I + W C+   S      W + R ++ P D
Sbjct: 163 AAVLIAIVWICSSAISFPAIVWWRAVRTEEVPED 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,439
Number of Sequences: 438
Number of extensions: 1760
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)