Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0167
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ...    30   1.4  
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    28   5.7  
At1g12080.2 68414.m01397 expressed protein                             28   5.7  
At1g12080.1 68414.m01396 expressed protein                             28   5.7  
At5g42430.1 68418.m05165 F-box family protein contains Pfam prof...    27   9.9  
At2g45160.1 68415.m05622 scarecrow transcription factor family p...    27   9.9  

>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
           WD-40 repeats (PF00400) (2 weak)
          Length = 1108

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 297 PRSWPSSEQWRPSYCFQATSP 235
           P+SW  +E   PS CFQAT P
Sbjct: 727 PKSWQLAEILDPSQCFQATLP 747


>At3g53090.1 68416.m05851 HECT-domain-containing protein /
            ubiquitin-transferase family protein / IQ
            calmodulin-binding motif-containing protein contains Pfam
            profiles PF00632: HECT-domain (ubiquitin-transferase),
            PF00612: IQ calmodulin-binding motif
          Length = 1142

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 156  RYAHRLREYHLVRQTXPSTSLGQRISVDLVSTSMASTFN 40
            +Y H + +Y L RQ  P ++   R   DL+S +    FN
Sbjct: 966  QYIHAMADYKLNRQIVPFSNAFYRGLTDLISPAWLKLFN 1004


>At1g12080.2 68414.m01397 expressed protein
          Length = 138

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 124 EVILAEPVGVPVPRRADSPEKTPSVEEIQXKLKAAEERRRSLEA 255
           EVI   PV     ++A+   +TP+V E + K +  EE++  + A
Sbjct: 84  EVITETPVVEEEEKKAEEVTETPAVVEEEKKTEVVEEKQTEVAA 127


>At1g12080.1 68414.m01396 expressed protein
          Length = 104

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 124 EVILAEPVGVPVPRRADSPEKTPSVEEIQXKLKAAEERRRSLEA 255
           EVI   PV     ++A+   +TP+V E + K +  EE++  + A
Sbjct: 50  EVITETPVVEEEEKKAEEVTETPAVVEEEKKTEVVEEKQTEVAA 93


>At5g42430.1 68418.m05165 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 395

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
 Frame = -1

Query: 255 CFQATSPLFSCLQLXLDLFDGRS-----LFG*VGATGNRYAH 145
           CF   S  F CL L  D F  RS       G +G    +YAH
Sbjct: 225 CFDVRSEKFKCLNLNQDCFSERSTKLIYYKGKLGVVNLKYAH 266


>At2g45160.1 68415.m05622 scarecrow transcription factor family
           protein 
          Length = 640

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 122 YARPXLRHLLVSGFRWI*FQLPWLPLLTDRDFETAEL 12
           + +P +  LL+   RWI    PW  L T   F  A L
Sbjct: 558 WVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPASL 594


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,815,964
Number of Sequences: 28952
Number of extensions: 127730
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)